| HGNC Family | Non-coding RNAs |
| Name | KCNIP4 intronic transcript 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) are critical regulators of gene expression and play pivotal roles in processes such as cell proliferation, apoptosis, differentiation, stress response, and the modulation of the tumor microenvironment. Although direct studies on KCNIP4‐IT1 are limited, its potential functions may be inferred from investigations into lncRNAs across various cancer types. As reviewed by recent work on non‐coding RNAs, these transcripts are now recognized as important mediators of cellular physiology and disease, where they frequently control transcriptional and post‐transcriptional processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In hepatocellular carcinoma, deregulated lncRNAs have been associated with tumor progression and survival outcomes, which suggests that aberrant expression of KCNIP4‐IT1 might similarly serve as a prognostic marker and influence key oncogenic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, studies utilizing advanced imaging and adaptive radiotherapy have demonstrated that lncRNA expression is altered in response to DNA damage and cellular stress, underscoring their potential role in mediating treatment responsiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In the tumor microenvironment, including in pancreatic ductal adenocarcinoma, lncRNAs have been implicated in intercellular communication—such as via cytokine signaling—that promotes tumor growth, invasion, and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Similarly, in head and neck squamous cell carcinoma, treatment‐induced modulation of lncRNAs hints at their involvement in cellular responses to irradiation and chemotherapy, which might extend to KCNIP4‐IT1 in influencing cancer cell survival and adaptation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these multi‐cancer studies support a model in which KCNIP4‐IT1, as a lncRNA, may contribute to oncogenesis by modulating gene expression networks that govern cell cycle control, apoptosis, and the complex interactions between tumor cells and their surrounding stroma. This places KCNIP4‐IT1 as a potential biomarker for cancer prognosis and a promising target for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "P Perez, S I Jang, I Alevizos "}, {"type": "b", "children": [{"type": "t", "text": "Emerging landscape of non-coding RNAs in oral health and disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oral Dis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/odi.12142"}], "href": "https://doi.org/10.1111/odi.12142"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23781896"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23781896"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jing Shen, Abby B Siegel, Helen Remotti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Exploration of Deregulated Long Non-Coding RNAs in Association with Hepatocarcinogenesis and Survival."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancers (Basel) (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cancers7030865"}], "href": "https://doi.org/10.3390/cancers7030865"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26378581"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26378581"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Sarah A Mason, Tuathan P O'Shea, Ingrid M White, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Towards ultrasound-guided adaptive radiotherapy for cervical cancer: Evaluation of Elekta's semiautomated uterine segmentation method on 3D ultrasound images."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Phys (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/mp.12325"}], "href": "https://doi.org/10.1002/mp.12325"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28493295"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28493295"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Meghna Waghray, Malica Yalamanchili, Michele Dziubinski, et al. "}, {"type": "b", "children": [{"type": "t", "text": "GM-CSF Mediates Mesenchymal-Epithelial Cross-talk in Pancreatic Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Discov (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/2159-8290.CD-15-0947"}], "href": "https://doi.org/10.1158/2159-8290.CD-15-0947"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27184426"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27184426"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kacper Guglas, Tomasz Kolenda, Anna Teresiak, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA Expression after Irradiation and Chemoexposure of HNSCC Cell Lines."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Noncoding RNA (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ncrna4040033"}], "href": "https://doi.org/10.3390/ncrna4040033"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30441874"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30441874"}]}]}]}
|
| Synonyms | NCRNA00099, UM9(5), UM9-5 |
| NCBI Gene ID | 359822 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
KCNIP4-IT1 has 339 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 11 datasets.
Click the + buttons to view associations for KCNIP4-IT1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of KCNIP4-IT1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of KCNIP4-IT1 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of KCNIP4-IT1 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of KCNIP4-IT1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of KCNIP4-IT1 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of KCNIP4-IT1 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of KCNIP4-IT1 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of KCNIP4-IT1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of KCNIP4-IT1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at KCNIP4-IT1 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of KCNIP4-IT1 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |