| Name | KRAB box domain containing 5 |
| Description | Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Mar 2025] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n A review of the five provided abstracts reveals that none of these studies directly address or report on the function of the gene KRBOX5. Abstract (1) details a strategy for integrating copy number variation and gene expression data to identify prognostic biomarkers in breast cancer, while abstract (2) describes a network-driven approach (NETAM) for linking SNPs, gene traits, and phenotypes. Abstract (3) focuses on the characterization of long noncoding and circular RNA profiles in bladder cancer and their potential regulatory roles. Abstract (4) (the truncated study) discusses the pervasive presence and possible regulatory roles of antisense transcripts and long noncoding RNAs, and abstract (5) reports on the tumor-suppressive effect of a specific circular RNA in oral squamous cell carcinoma. In none of these investigations is KRBOX5 mentioned or functionally characterized. Therefore, based on the current collection of abstracts, the role and mechanistic function of KRBOX5 in oncogenesis or other biological processes remain unresolved, highlighting an opportunity for future research to elucidate its potential regulatory or biomarker roles.\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n References:."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Chi-Cheng Huang, Shih-Hsin Tu, Heng-Hui Lien, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Concurrent gene signatures for han chinese breast cancers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0076421"}], "href": "https://doi.org/10.1371/journal.pone.0076421"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24098497"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24098497"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Seunghak Lee, Soonho Kong, Eric P Xing "}, {"type": "b", "children": [{"type": "t", "text": "A network-driven approach for genome-wide association mapping."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioinformatics (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/bioinformatics/btw270"}], "href": "https://doi.org/10.1093/bioinformatics/btw270"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27307613"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27307613"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mengge Huang, Zhenyu Zhong, Mengxin Lv, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of differentially expressed profiles of lncRNAs and circRNAs with associated co-expression and ceRNA networks in bladder carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.9706"}], "href": "https://doi.org/10.18632/oncotarget.9706"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27363013"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27363013"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Swaraj Basu, Erik Larsson "}, {"type": "b", "children": [{"type": "t", "text": "A Catalogue of Putative "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "cis"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": "-Regulatory Interactions Between Long Non-coding RNAs and Proximal Coding Genes Based on Correlative Analysis Across Diverse Human Tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "G3 (Bethesda) (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1534/g3.118.200296"}], "href": "https://doi.org/10.1534/g3.118.200296"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29666194"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29666194"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wen Su, Yufan Wang, Feng Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Circular RNA hsa_circ_0007059 indicates prognosis and influences malignant behavior via AKT/mTOR in oral squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28156"}], "href": "https://doi.org/10.1002/jcp.28156"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30680715"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30680715"}]}]}]}
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| NCBI Gene ID | 124411 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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KRBOX5 has 311 functional associations with biological entities spanning 5 categories (functional term, phrase or reference, chemical, cell line, cell type or tissue, gene, protein or microRNA, sequence feature) extracted from 12 datasets.
Click the + buttons to view associations for KRBOX5 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 | cellular components co-occuring with KRBOX5 protein in abstracts of biomedical publications from the COMPARTMENTS Text-mining Protein Localization Evidence Scores 2025 dataset. | |
| GTEx eQTL 2025 | SNPs regulating expression of KRBOX5 gene from the GTEx eQTL 2025 dataset. | |
| GTEx Tissue Gene Expression Profiles 2023 | tissues with high or low expression of KRBOX5 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles 2023 dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of KRBOX5 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| Reactome Pathways 2024 | pathways involving KRBOX5 protein from the Reactome Pathways 2024 dataset. | |
| Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of KRBOX5 gene from the Replogle et al., Cell, 2022 K562 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of KRBOX5 gene from the Replogle et al., Cell, 2022 K562 Genome-wide Perturb-seq Gene Perturbation Signatures dataset. | |
| Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures | gene perturbations changing expression of KRBOX5 gene from the Replogle et al., Cell, 2022 RPE1 Essential Perturb-seq Gene Perturbation Signatures dataset. | |
| RummaGEO Drug Perturbation Signatures | drug perturbations changing expression of KRBOX5 gene from the RummaGEO Drug Perturbation Signatures dataset. | |
| RummaGEO Gene Perturbation Signatures | gene perturbations changing expression of KRBOX5 gene from the RummaGEO Gene Perturbation Signatures dataset. | |
| TISSUES Curated Tissue Protein Expression Evidence Scores 2025 | tissues with high expression of KRBOX5 protein from the TISSUES Curated Tissue Protein Expression Evidence Scores 2025 dataset. | |
| TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 | tissues co-occuring with KRBOX5 protein in abstracts of biomedical publications from the TISSUES Text-mining Tissue Protein Expression Evidence Scores 2025 dataset. | |