| Name | LHX4 antisense RNA 1 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although the collected abstracts describe a broad spectrum of roles for non‐coding RNAs – ranging from the regulation of interchromosomal interactions in T‐cell differentiation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ", to rapid transcriptome reprogramming in response to estrogen"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "and to modulation of tumor phenotypes in gynecologic cancers"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", none of these studies provide a direct analysis of LHX4‐AS1, a long noncoding RNA transcribed antisense to the LIM homeobox gene LHX4. By analogy to other antisense lncRNAs that have been shown to regulate the expression of nearby protein‐coding genes through mechanisms including transcriptional interference, RNA stabilization, and epigenetic remodeling, LHX4‐AS1 may be postulated to act as a modulator of LHX4 expression. Its function might therefore influence developmental programs or disease processes in which LHX4 is implicated. However, in the absence of data directly addressing LHX4‐AS1 in these reports, its precise biological role remains to be established. Further targeted studies will be needed to determine whether LHX4‐AS1 coordinates the expression of LHX4 – or other genes – and to delineate its contribution to cellular physiology and pathology.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lark Kyun Kim, Enric Esplugues, Cornelia E Zorca, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Oct-1 regulates IL-17 expression by directing interchromosomal associations in conjunction with CTCF in T cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.molcel.2014.02.004"}], "href": "https://doi.org/10.1016/j.molcel.2014.02.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24613343"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24613343"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Nasun Hah, Charles G Danko, Leighton Core, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.cell.2011.03.042"}], "href": "https://doi.org/10.1016/j.cell.2011.03.042"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "21549415"}], "href": "https://pubmed.ncbi.nlm.nih.gov/21549415"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Rozita Akrami, Anders Jacobsen, Jessica Hoell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of long non-coding RNAs in ovarian cancer reveals global patterns and targeted DNA amplification."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0080306"}], "href": "https://doi.org/10.1371/journal.pone.0080306"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24265805"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24265805"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Maria A Smolle, Marc D Bullock, Hui Ling, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNAs in Endometrial Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms161125962"}], "href": "https://doi.org/10.3390/ijms161125962"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26556343"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26556343"}]}]}]}
|
| NCBI Gene ID | 100527964 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
LHX4-AS1 has 337 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LHX4-AS1 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of LHX4-AS1 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LHX4-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LHX4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LHX4-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LHX4-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LHX4-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |