LIMD1-AS1 Gene

Name LIMD1 antisense RNA 1
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Multiple studies have demonstrated that long non‐coding RNAs (lncRNAs) play key roles in tumor biology across various cancer types. In non‐small cell lung cancer (NSCLC), the lncRNA LIMD1 antisense RNA 1 (LIMD1‐AS1) has emerged as a critical tumor suppressor. Specifically, in NSCLC samples and cell lines, LIMD1‐AS1 is downregulated, and its experimental knockdown leads to enhanced tumor growth both in vitro and in vivo. Mechanistic investigations revealed that LIMD1‐AS1 exerts its function by interacting with the RNA‐binding protein heterogeneous nuclear ribonucleoprotein U (hnRNP U), which in turn stabilizes LIMD1 mRNA. This stabilization enhances LIMD1 expression—a known tumor suppressor in lung cancer—thereby inhibiting cell proliferation and promoting apoptosis (see"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, analogous evidence from studies in other malignancies supports the broader oncological promise of lncRNA-mediated regulation. In clear cell renal cell carcinoma, genome-wide analyses have identified distinct copy number alterations that impact tumor progression, while in melanoma, comprehensive ceRNA network analyses have underscored the prognostic potential of lncRNAs (see"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Together, these findings highlight that LIMD1‐AS1 not only reinforces LIMD1’s tumor suppressive activity in NSCLC but also exemplifies a broader mechanism wherein lncRNAs modulate gene stability and function, offering promising targets for future molecular‐targeted therapies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jianyuan Pan, Yongqin Tang, Shumei Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LIMD1-AS1 suppressed non-small cell lung cancer progression through stabilizing LIMD1 mRNA via hnRNP U."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.2898"}], "href": "https://doi.org/10.1002/cam4.2898"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32239804"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32239804"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ling Wang, Ayrianna Sparks-Wallace, Jared L Casteel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Algorithm-Based Meta-Analysis Reveals the Mechanistic Interaction of the Tumor Suppressor LIMD1 With Non-Small-Cell Lung Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.632638"}], "href": "https://doi.org/10.3389/fonc.2021.632638"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33869018"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33869018"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "H-J Thiesen, F Steinbeck, M Maruschke, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Stratification of clear cell renal cell carcinoma (ccRCC) genomes by gene-directed copy number alteration (CNA) analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0176659"}], "href": "https://doi.org/10.1371/journal.pone.0176659"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28486536"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28486536"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Nian Liu, Zijian Liu, Xinxin Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of a Competing Endogenous RNA Network Identifies Seven-lncRNA Signature as a Prognostic Biomarker for Melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2019.00935"}], "href": "https://doi.org/10.3389/fonc.2019.00935"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31649871"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31649871"}]}]}]}
NCBI Gene ID 644714
API
Download Associations
Predicted Functions View LIMD1-AS1's ARCHS4 Predicted Functions.
Co-expressed Genes View LIMD1-AS1's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LIMD1-AS1's ARCHS4 Predicted Functions.

Functional Associations

LIMD1-AS1 has 738 functional associations with biological entities spanning 5 categories (disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 12 datasets.

Click the + buttons to view associations for LIMD1-AS1 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LIMD1-AS1 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LIMD1-AS1 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LIMD1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LIMD1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LIMD1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LIMD1-AS1 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LIMD1-AS1 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LIMD1-AS1 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LIMD1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LIMD1-AS1 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LIMD1-AS1 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LIMD1-AS1 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.