LINC-PINT Gene

HGNC Family Non-coding RNAs
Name long intergenic non-protein coding RNA, p53 induced transcript
Description Involved in negative regulation of transcription by RNA polymerase II. Located in nucleus. [provided by Alliance of Genome Resources, Mar 2025]
Summary
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In certain contexts, it modulates epigenetic silencing by directly interacting with the Polycomb repressive complex 2 (PRC2) to target key genes for H3K27 trimethylation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", while in glioblastoma a circular RNA derived from LINC‐PINT encodes an 87–amino acid peptide that binds to the polymerase associated factor complex (PAF1c) to inhibit transcriptional elongation of oncogenes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Additionally, LINC‐PINT functions as a molecular “sponge” for several microRNAs—including miR‐21, miR‐543, miR‐576‐5p, miR‐208a‐3p, miR‐374a‐5p, miR‐523‐3p, and miR‐155‐5p—thereby regulating downstream effectors such as PDCD4, PTEN, DKK1, and SOCS1 that govern cellular proliferation, apoptosis, migration, invasion, and response to chemotherapeutics."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "8"}, {"type": "fg_f", "ref": "13"}, {"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond its role in tumorigenesis, LINC‐PINT is implicated in non‐neoplastic conditions. For instance, its increased expression in neurons appears to offer neuroprotection in Parkinson’s disease"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": ", while in the context of diabetes, LINC‐PINT supports pancreatic β–cell function and its overexpression mitigates complications such as cardiomyopathy and retinopathy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "16"}]}, {"type": "t", "text": " Moreover, genetic polymorphisms in the LINC‐PINT gene have been associated with altered susceptibility to a range of conditions—including rheumatoid arthritis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": ", hepatitis C-induced lipogenesis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "18"}]}, {"type": "t", "text": ", high–altitude pulmonary edema"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "19"}]}, {"type": "t", "text": ", steroid–induced osteonecrosis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "20"}]}, {"type": "t", "text": ", and autoimmune diseases such as pemphigus foliaceus"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "21"}]}, {"type": "t", "text": ", as well as modulating vascular pathology in Alzheimer’s disease‐related cerebral amyloid angiopathy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "22"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Furthermore, LINC‐PINT influences the therapeutic response of tumors by enhancing radiosensitivity in nasopharyngeal carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "23"}]}, {"type": "t", "text": "and by sensitizing triple-negative breast cancer cells to chemotherapeutic agents through interactions that destabilize RNA-binding proteins such as NONO."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": " A global review of LINC‐PINT’s functions further underscores its clinical potential as a diagnostic biomarker and therapeutic target in diverse pathological settings."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "24"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, LINC‐PINT exerts critical roles in modulating tumor progression and non–cancer disease processes through a spectrum of mechanisms—including epigenetic modulation, microRNA sponging, and even the production of regulatory peptides—thus representing a promising target for future therapeutic interventions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Maolei Zhang, Kun Zhao, Xiaoping Xu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide analysis identifies a novel LINC-PINT splice variant associated with vascular amyloid pathology in Alzheimer's disease."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Neuropathol Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s40478-021-01199-2"}], "href": "https://doi.org/10.1186/s40478-021-01199-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34020725"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34020725"}]}, {"type": "r", "ref": 23, "children": [{"type": "t", "text": "You-Hong Wang, Zhen Guo, Liang An, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC-PINT impedes DNA repair and enhances radiotherapeutic response by targeting DNA-PKcs in nasopharyngeal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-021-03728-2"}], "href": "https://doi.org/10.1038/s41419-021-03728-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33963177"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33963177"}]}, {"type": "r", "ref": 24, "children": [{"type": "t", "text": "Ihtisham Bukhari, Muhammad Riaz Khan, Mohammed Amir Hussain, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PINTology: A short history of the lncRNA LINC-PINT in different diseases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Wiley Interdiscip Rev RNA (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/wrna.1705"}], "href": "https://doi.org/10.1002/wrna.1705"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35019222"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35019222"}]}]}]}
Synonyms LINCRNA-PINT, PINT, MKLN1-AS1
NCBI Gene ID 378805
API
Download Associations
Predicted Functions View LINC-PINT's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC-PINT's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC-PINT's ARCHS4 Predicted Functions.

Functional Associations

LINC-PINT has 550 functional associations with biological entities spanning 4 categories (disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for LINC-PINT from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC-PINT gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC-PINT gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC-PINT gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC-PINT gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
dbGAP Gene-Trait Associations traits associated with LINC-PINT gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with LINC-PINT gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC-PINT gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC-PINT gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GO Biological Process Annotations 2023 biological processes involving LINC-PINT gene from the curated GO Biological Process Annotations 2023 dataset.
GO Cellular Component Annotations 2023 cellular components containing LINC-PINT protein from the curated GO Cellular Component Annotations 2023 dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC-PINT gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC-PINT gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
HuGE Navigator Gene-Phenotype Associations phenotypes associated with LINC-PINT gene by text-mining GWAS publications from the HuGE Navigator Gene-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC-PINT gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC-PINT gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC-PINT protein from the LOCATE Predicted Protein Localization Annotations dataset.
MGI Mouse Phenotype Associations 2023 phenotypes of transgenic mice caused by LINC-PINT gene mutations from the MGI Mouse Phenotype Associations 2023 dataset.