| HGNC Family | Non-coding RNAs |
| Name | long intergenic non-protein coding RNA, regulator of reprogramming |
| Description | This gene produces a long non-coding RNA that regulates the reprogramming of pluripotent stem cells. This RNA suppresses induction of tumor protein p53 after DNA damage. It is thought to act as a sponge for microRNAs that regulate stem cell factors POU class 5 homeobox 1, Nanog, and SRY-box 2. This RNA may also have a extracellular role in modulating response to hypoxia in hepatocellular cancer cells. Expression of this transcript is associated with tumor progression and epithelial to mesenchymal transition and metastasis. [provided by RefSeq, Dec 2017] |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long intergenic non‐coding RNA, linc‐ROR, functions as a key regulator in both the maintenance of pluripotency in human embryonic stem cells (ESCs) and the progression of cancer. In ESCs, linc‐ROR acts as a competing endogenous RNA (ceRNA) that shares microRNA‐response elements with core transcription factors—such as OCT4, SOX2, and NANOG—thereby protecting these pivotal factors from microRNA‐mediated suppression and establishing a feedback loop that underlies self‐renewal and proper differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n In breast cancer, linc‐ROR is upregulated and its ectopic overexpression in mammary epithelial cells induces an epithelial‐to‐mesenchymal transition (EMT) program. This linc‐ROR‐mediated ceRNA activity sequesters microRNAs like miR-205, preventing the degradation of targets such as ZEB2, an EMT inducer, consequently enhancing cell migration, invasion, and the acquisition of stem cell characteristics that contribute to tumor progression and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yue Wang, Zhenyu Xu, Junfeng Jiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Endogenous miRNA sponge lincRNA-RoR regulates Oct4, Nanog, and Sox2 in human embryonic stem cell self-renewal."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Cell (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.devcel.2013.03.002"}], "href": "https://doi.org/10.1016/j.devcel.2013.03.002"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23541921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23541921"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "P Hou, Y Zhao, Z Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LincRNA-ROR induces epithelial-to-mesenchymal transition and contributes to breast cancer tumorigenesis and metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cddis.2014.249"}], "href": "https://doi.org/10.1038/cddis.2014.249"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24922071"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24922071"}]}]}]}
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| Synonyms | ROR, LINCRNA-ROR, lincRNA-ST8SIA3 |
| NCBI Gene ID | 100885779 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC-ROR has 185 functional associations with biological entities spanning 3 categories (functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LINC-ROR from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC-ROR gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC-ROR gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with LINC-ROR gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC-ROR gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC-ROR gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC-ROR gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |