LINC00028 Gene

Name long intergenic non-protein coding RNA 28
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00028 is a long intergenic non‐coding RNA that has emerged as a regulatory player in diverse disease contexts. In osteosarcoma, LINC00028 was identified as part of a competing endogenous RNA network regulating key mRNAs (RAP1B, ATF2, and PPM1B) via interactions with miRNAs (hsa‐miR‑124 and hsa‑miR‑7). In this setting, increased expression of LINC00028 was associated with improved patient prognosis and appears to modulate the MAPK signaling pathway, suggesting it may have a protective role against tumor recurrence."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In an independent study focusing on glaucoma, LINC00028 expression was significantly elevated in both patient tissues and transforming growth factor β1 (TGFβ1)–treated human tenon capsule fibroblasts. Functional assays revealed that downregulation of LINC00028 curtailed TGFβ1-induced fibroblast proliferation, migration, invasion, epithelial-mesenchymal transition, fibrosis, and autophagy. Mechanistically, LINC00028 acted as a competitive endogenous RNA that sequestered miR‑204‑5p, thereby promoting these cellular processes and contributing to the formation of post-surgical scarring."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings indicate that LINC00028 plays context-dependent roles by modulating key signaling pathways—exerting a potentially beneficial effect in osteosarcoma through its association with improved prognosis, while facilitating fibrotic responses in glaucoma. This multifaceted regulatory capacity highlights its promise as both a prognostic biomarker and a therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shanyong Zhang, Lei Ding, Xin Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of biomarkers associated with the recurrence of osteosarcoma using ceRNA regulatory network analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijmm.2019.4108"}], "href": "https://doi.org/10.3892/ijmm.2019.4108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30816442"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30816442"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Huali Sui, Shanshan Fan, Wenjing Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00028 regulates the development of TGFβ1-treated human tenon capsule fibroblasts by targeting miR-204-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.01.096"}], "href": "https://doi.org/10.1016/j.bbrc.2020.01.096"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32085895"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32085895"}]}]}]}
Synonyms C20ORF93, NCRNA00028, DJ1093G12.6
NCBI Gene ID 140875
API
Download Associations
Predicted Functions View LINC00028's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00028's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00028's ARCHS4 Predicted Functions.

Functional Associations

LINC00028 has 859 functional associations with biological entities spanning 4 categories (molecular profile, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for LINC00028 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00028 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00028 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00028 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00028 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00028 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00028 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00028 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00028 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00028 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00028 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00028 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00028 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00028 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00028 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00028 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00028 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00028 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00028 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.