| Name | long intergenic non-protein coding RNA 32 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the provided abstracts explicitly mention “LINC00032,” their collective findings highlight functional characteristics common to long intergenic non‐coding RNAs that can be extended to LINC00032. For instance, one study finely mapped breakpoints in the 9p21 region and identified a gene acting as a candidate tumor suppressor in melanoma, suggesting that disruption of regulatory elements in this region—including non‐coding transcripts—may contribute to tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a related context, a study of a family with frontotemporal dementia–amyotrophic lateral sclerosis (FTD-ALS) linked the 9p region to neurodegenerative disease, implying that non-coding regulatory elements in these regions might also influence neuronal integrity."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, comprehensive analyses of large intergenic non-coding RNAs have demonstrated that genetic variants in transcription factor binding sites (TFBSs) of these RNAs can modulate their expression and, consequently, the susceptibility to human diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In cancer models, integrative approaches have revealed that lncRNAs can function in synergistic networks as regulatory hubs that co-regulate functional modules, thereby influencing diverse oncogenic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Finally, large-scale expression profiling has underscored the clinical relevance of non-coding RNAs by identifying prognostic signatures in cancers such as glioblastoma, where these transcripts contribute to key signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings support the notion that LINC00032, as a long intergenic non-coding RNA, may play an important regulatory role, possibly functioning as a tumor suppressor and as a coordinator of gene expression networks in both oncogenic and neurodegenerative settings. Its potential involvement in modulating transcription factor interactions and maintaining the integrity of functional modules renders it a promising candidate for further investigation into its mechanistic roles and therapeutic potential.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Miguel Angel Pujana, Anna Ruiz, Cèlia Badenas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Molecular characterization of a t(9;12)(p21;q13) balanced chromosome translocation in combination with integrative genomics analysis identifies C9orf14 as a candidate tumor-suppressor."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genes Chromosomes Cancer (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/gcc.20396"}], "href": "https://doi.org/10.1002/gcc.20396"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17099875"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17099875"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Adam L Boxer, Ian R Mackenzie, Bradley F Boeve, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Clinical, neuroimaging and neuropathological features of a new chromosome 9p-linked FTD-ALS family."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Neurol Neurosurg Psychiatry (2011)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/jnnp.2009.204081"}], "href": "https://doi.org/10.1136/jnnp.2009.204081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20562461"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20562461"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shangwei Ning, Zuxianglan Zhao, Jingrun Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SNP@lincTFBS: an integrated database of polymorphisms in human LincRNA transcription factor binding sites."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0103851"}], "href": "https://doi.org/10.1371/journal.pone.0103851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25075616"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25075616"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yongsheng Li, Juan Chen, Jinwen Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.4660"}], "href": "https://doi.org/10.18632/oncotarget.4660"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26305674"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26305674"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Zhenyu Gong, Fan Hong, Hongxiang Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An eight-mRNA signature outperforms the lncRNA-based signature in predicting prognosis of patients with glioblastoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12881-020-0992-7"}], "href": "https://doi.org/10.1186/s12881-020-0992-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32188434"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32188434"}]}]}]}
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| Synonyms | C9ORF14, NCRNA00032 |
| Proteins | CI014_HUMAN |
| NCBI Gene ID | 158035 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00032 has 815 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 25 datasets.
Click the + buttons to view associations for LINC00032 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00032 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00032 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00032 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00032 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00032 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00032 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00032 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00032 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GeneRIF Biological Term Annotations | biological terms co-occuring with LINC00032 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00032 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00032 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00032 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00032 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00032 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00032 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00032 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00032 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00032 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00032 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00032 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |