LINC00051 Gene

Name long intergenic non-protein coding RNA 51
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00051 (alternatively annotated as NCRNA00051) is a long non‐coding RNA that has emerged from genome‐wide studies as a potential contributor to disease susceptibility. In a recent genome‐wide association study focused on sporadic Parkinson’s disease in a Han Chinese cohort, the FLJ43860/NCRNA00051 locus (represented by the variant kgp4105983) showed one of the strongest associations with disease risk. Although its precise molecular function is not yet fully characterized, this finding suggests that LINC00051 may participate in regulatory networks affecting neuronal processes—potentially influencing pathways such as axon guidance, extracellular matrix–receptor interactions, and synaptic communication—that are critical for neuronal integrity and function. Understanding its role in these pathways may offer insights into the molecular mechanisms underpinning neurodegeneration in Parkinson’s disease. Further research is needed to elucidate its exact function as well as its potential involvement in the broader regulatory landscapes observed in other conditions, including alcohol‐related organ damage, breast cancer regulatory networks, and epilepsy, where non‐coding RNAs play key modulatory roles."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Sathish Kumar Natarajan, Joseph M Pachunka, Justin L Mott "}, {"type": "b", "children": [{"type": "t", "text": "Role of microRNAs in Alcohol-Induced Multi-Organ Injury."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomolecules (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/biom5043309"}], "href": "https://doi.org/10.3390/biom5043309"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26610589"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26610589"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yuhan Zhang, Yongfeng Li, Qing Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of an lncRNA‑miRNA‑mRNA interaction mechanism in breast cancer based on bioinformatic analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2017.7304"}], "href": "https://doi.org/10.3892/mmr.2017.7304"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28849135"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28849135"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Eduardo Pérez-Palma, Ingo Helbig, Karl Martin Klein, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Heterogeneous contribution of microdeletions in the development of common generalised and focal epilepsies."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Med Genet (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1136/jmedgenet-2016-104495"}], "href": "https://doi.org/10.1136/jmedgenet-2016-104495"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28756411"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28756411"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yakun Hu, Libing Deng, Jie Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Pooling Genome-Wide Association Study Combining a Pathway Analysis for Typical Sporadic Parkinson's Disease in the Han Population of Chinese Mainland."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Neurobiol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12035-015-9331-y"}], "href": "https://doi.org/10.1007/s12035-015-9331-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26227905"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26227905"}]}]}]}
Synonyms NCRNA00051, C8ORF43
NCBI Gene ID 619434
API
Download Associations
Predicted Functions View LINC00051's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00051's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00051's ARCHS4 Predicted Functions.

Functional Associations

LINC00051 has 606 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for LINC00051 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00051 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00051 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00051 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00051 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00051 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00051 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00051 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00051 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00051 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00051 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00051 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00051 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00051 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00051 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00051 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00051 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00051 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00051 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.