LINC00052 Gene

Name long intergenic non-protein coding RNA 52
Description Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00052 is a long non‐coding RNA with multifaceted, context‐dependent functions that have been implicated in both tumor suppression and tumor promotion as well as in non‐malignant conditions. In certain cancers such as hepatocellular carcinoma, colorectal cancer, glioma, and pancreatic cancer, LINC00052 is expressed at low levels, and its overexpression suppresses cell proliferation, migration, invasion, and metastasis by acting as a competing endogenous RNA that sponges specific microRNAs—in turn downregulating oncogenic targets like NTRK3, SOX9, CALCOCO1, and IGF2."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": " In contrast, in specific subtypes of breast cancer and in gastric cancer, high LINC00052 expression promotes tumorigenesis by correlating with enhanced receptor‐mediated oncogenic signaling (for example, HER3 signaling) and by facilitating activation of the Wnt/β‐catenin pathway through β‐catenin methylation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond oncology, LINC00052 also regulates key processes in non‐cancer pathologies. For instance, in neuropathic pain models, its elevated expression promotes neuroinflammation via a microRNA‐dependent mechanism that modulates JAK1 levels"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": ", and in acute kidney injury models, altered LINC00052 expression affects hypoxia‐induced cell proliferation, apoptosis, and inflammatory cytokine production."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, studies in breast cancer spheroids have implicated LINC00052 in the modulation of cholesterol metabolic pathways and cellular motility"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": ", and its inclusion in diagnostic panels for triple‐negative breast cancer and tongue squamous cell carcinoma underscores its potential utility as a prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " A recent review further emphasizes the diverse roles of LINC00052 in tumorigenesis across multiple cancer types"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": ", while additional evidence suggests that LINC00052 may also impact oncogenic signaling via cytoskeletal remodeling and the Notch/β‐catenin/NF‐κB axis in breast cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that LINC00052 functions as a versatile regulator, acting either as a tumor suppressor or promoter depending on the cellular context, and highlight its promise as both a diagnostic biomarker and a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Dongmei Xiong, Yanrui Sheng, Shijia Ding, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052 regulates the expression of NTRK3 by miR-128 and miR-485-3p to strengthen HCC cells invasion and migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.10250"}], "href": "https://doi.org/10.18632/oncotarget.10250"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27351280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27351280"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Shaoying Yan, Xuefeng Shan, Ke Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052/miR-101-3p axis inhibits cell proliferation and metastasis by targeting SOX9 in hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2018.08.038"}], "href": "https://doi.org/10.1016/j.gene.2018.08.038"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30098428"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30098428"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Gangfeng Yu, Dongmei Xiong, Zhengshu Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00052 inhibits colorectal cancer metastasis by sponging microRNA-574-5p to modulate CALCOCO1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28988"}], "href": "https://doi.org/10.1002/jcb.28988"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31104316"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31104316"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yinzi Piao, Mingyang Li, Qian Zhang "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052 suppressed glioma cell proliferation and invasion by downregulating insulin-like growth factor 2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Transl Cancer Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.21037/tcr.2019.07.55"}], "href": "https://doi.org/10.21037/tcr.2019.07.55"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35116894"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35116894"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xingcheng Xiong, Qiao Shi, Xiaojia Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052 functions as a tumor suppressor through negatively modulating miR-330-3p in pancreatic cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28209"}], "href": "https://doi.org/10.1002/jcp.28209"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30712321"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30712321"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ahmad Salameh, Xuejun Fan, Byung-Kwon Choi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HER3 and LINC00052 interplay promotes tumor growth in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.14313"}], "href": "https://doi.org/10.18632/oncotarget.14313"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28036286"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28036286"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yuqiang Shan, Rongchao Ying, Zhong Jia, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052 Promotes Gastric Cancer Cell Proliferation and Metastasis via Activating the Wnt/β-Catenin Signaling Pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Res (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3727/096504017X14897896412027"}], "href": "https://doi.org/10.3727/096504017X14897896412027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28337962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28337962"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Li Wang, Kairun Zhu, Bingyi Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of Linc00052 alleviated spinal nerve ligation-triggered neuropathic pain through regulating miR-448 and JAK1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.29465"}], "href": "https://doi.org/10.1002/jcp.29465"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32012267"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32012267"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Xiaoying Li, Pengxi Zheng, Tingting Ji, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00052 ameliorates acute kidney injury by sponging miR-532-3p and activating the Wnt signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.104152"}], "href": "https://doi.org/10.18632/aging.104152"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33231561"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33231561"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Laura Muñoz-Galindo, Jorge Melendez-Zajgla, Thalia Pacheco-Fernández, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Changes in the transcriptome profile of breast cancer cells grown as spheroids."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.06.155"}], "href": "https://doi.org/10.1016/j.bbrc.2019.06.155"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31301772"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31301772"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Mingming Lv, Pengfei Xu, Ying Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNAs as new biomarkers to differentiate triple negative breast cancer from non-triple negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7509"}], "href": "https://doi.org/10.18632/oncotarget.7509"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26910840"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26910840"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Shusen Zhang, Ruoyan Cao, Qiulan Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of lncRNA-associated competing endogenous RNA network in tongue squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PeerJ (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7717/peerj.6397"}], "href": "https://doi.org/10.7717/peerj.6397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30755833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30755833"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Dongmei Xiong, Dan Wang, Yanmeng Chen "}, {"type": "b", "children": [{"type": "t", "text": "Role of the long non-coding RNA LINC00052 in tumors."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2021.12577"}], "href": "https://doi.org/10.3892/ol.2021.12577"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33692848"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33692848"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jose Manuel Sanchez-Lopez, Edna Ayerim Mandujano-Tinoco, Alfredo Garcia-Venzor, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrative analysis of transcriptional profile reveals LINC00052 as a suppressor of breast cancer cell migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Biomark (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3233/CBM-200337"}], "href": "https://doi.org/10.3233/CBM-200337"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33361583"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33361583"}]}]}]}
Synonyms NCRNA00052, TMEM83
Proteins TMM83_HUMAN
NCBI Gene ID 145978
API
Download Associations
Predicted Functions View LINC00052's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00052's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00052's ARCHS4 Predicted Functions.

Functional Associations

LINC00052 has 662 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for LINC00052 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00052 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00052 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00052 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00052 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00052 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00052 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00052 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00052 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00052 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00052 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00052 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00052 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00052 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00052 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00052 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00052 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00052 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00052 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.