LINC00111 Gene

Name long intergenic non-protein coding RNA 111
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) have emerged as key regulators in cancer biology, and recent integrative analyses of competing endogenous RNA (ceRNA) networks in gastric cancer have identified LINC00111 as a promising prognostic biomarker specifically in Helicobacter pylori–positive cases (5). In this context, differential expression profiling of gastric adenocarcinoma samples revealed that LINC00111, along with other lncRNAs and mRNAs, is significantly associated with several cancer‐related pathways—including cytokine–cytokine receptor interaction, HIF‐1, and Wnt signaling—that contribute to tumor progression and modulate the immune response in the setting of H. pylori infection (5). Although previous studies have elucidated novel platelet proteins involved in thrombosis (1), characterized post‐translational epigenetic regulators (2), identified new susceptibility loci and noncoding RNAs in basal cell carcinoma (3), and investigated factors governing ciliogenesis and related human diseases (4), these investigations did not address the role of LINC00111. By contrast, the study focused on H. pylori–positive gastric cancer demonstrates that LINC00111 may function as a key component of the ceRNA network, potentially influencing gene regulatory circuits that underpin tumor biology in this subset of patients (5). Collectively, these findings highlight the potential utility of LINC00111 as a biomarker for prognosis and underscore its relevance in the molecular pathogenesis of H. pylori–related gastric cancer."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Marie N O'Connor, Isabelle I Salles, Ana Cvejic, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Functional genomics in zebrafish permits rapid characterization of novel platelet membrane proteins."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2008-06-162693"}], "href": "https://doi.org/10.1182/blood-2008-06-162693"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19109564"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19109564"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Obiamaka Obianyo, Corey P Causey, Tanesha C Osborne, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A chloroacetamidine-based inactivator of protein arginine methyltransferase 1: design, synthesis, and in vitro and in vivo evaluation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chembiochem (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cbic.201000209"}], "href": "https://doi.org/10.1002/cbic.201000209"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20480486"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20480486"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Harvind S Chahal, Wenting Wu, Katherine J Ransohoff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genome-wide association study identifies 14 novel risk alleles associated with basal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms12510"}], "href": "https://doi.org/10.1038/ncomms12510"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27539887"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27539887"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Gabrielle Wheway, Miriam Schmidts, Dorus A Mans, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An siRNA-based functional genomics screen for the identification of regulators of ciliogenesis and ciliopathy genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Cell Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncb3201"}], "href": "https://doi.org/10.1038/ncb3201"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26167768"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26167768"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yanyan Liu, Jingyu Zhu, Xiaoli Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "ceRNA network construction and comparison of gastric cancer with or without Helicobacter pylori infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.27467"}], "href": "https://doi.org/10.1002/jcp.27467"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30370523"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30370523"}]}]}]}
Synonyms C21ORF21, NCRNA00111
NCBI Gene ID 54090
API
Download Associations
Predicted Functions View LINC00111's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00111's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00111's ARCHS4 Predicted Functions.

Functional Associations

LINC00111 has 988 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for LINC00111 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00111 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00111 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00111 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00111 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00111 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00111 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00111 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00111 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00111 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00111 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00111 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00111 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00111 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00111 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00111 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.