| Name | long intergenic non-protein coding RNA 160 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00160 is an oncogenic long non‐coding RNA that plays multifaceted roles in cancer progression and drug resistance across different tumor types. In breast cancer, LINC00160 is up‐regulated in paclitaxel‐ and doxorubicin‐resistant cells where it promotes chemoresistance by recruiting the transcription factor C/EBPβ to the promoter of TFF3, thereby enhancing cell migration, invasion, and tumor growth, and correlates with a poor clinical response to paclitaxel."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In prostate cancer, LINC00160 is induced by STAT3 and acts as a transcriptional activator, epigenetically repressing RCAN1 through its association with EZH2. This results in increased proliferation, reduced apoptosis, and enhanced glycolysis, suggesting that LINC00160 contributes to tumor metabolism and progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In renal cell carcinoma, LINC00160 has been implicated in sunitinib resistance by recruiting TFAP2A to activate SAA1 expression. Elevated SAA1 not only facilitates drug efflux via its interaction with ABCB1, but also stimulates the JAK-STAT signaling pathway, thereby mitigating the anti-tumor effects of sunitinib."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, in estrogen receptor–positive breast cancer cells, LINC00160 is identified as a direct transcriptional target of ERα, and its silencing leads to a reduction in cellular proliferation, highlighting its potential as a novel biomarker for endocrine response and a therapeutic target."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Huaiguo Wu, Juan Gu, Daoping Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00160 mediated paclitaxel-And doxorubicin-resistance in breast cancer cells by regulating TFF3 via transcription factor C/EBPβ."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.15487"}], "href": "https://doi.org/10.1111/jcmm.15487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32652877"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32652877"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Wenjing Zhu, Dongya Sheng, Yiqun Shao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "STAT3-regulated LncRNA LINC00160 mediates cell proliferation and cell metabolism of prostate cancer cells by repressing RCAN1 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Cell Biochem (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s11010-021-04284-1"}], "href": "https://doi.org/10.1007/s11010-021-04284-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35067783"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35067783"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Gong Cheng, Yuenan Liu, Lilong Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00160 mediates sunitinib resistance in renal cell carcinoma via SAA1 that is implicated in STAT3 activation and compound transportation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.103755"}], "href": "https://doi.org/10.18632/aging.103755"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32921632"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32921632"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Philip Jonsson, Cristian Coarfa, Fahmi Mesmar, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Endocrinol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/me.2015-1153"}], "href": "https://doi.org/10.1210/me.2015-1153"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26426411"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26426411"}]}]}]}
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| Synonyms | NCRNA00160, C21ORF52 |
| NCBI Gene ID | 54064 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00160 has 659 functional associations with biological entities spanning 3 categories (molecular profile, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for LINC00160 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00160 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00160 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00160 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00160 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00160 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00160 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00160 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00160 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00160 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00160 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00160 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00160 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00160 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00160 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00160 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |