LINC00162 Gene

HGNC Family Non-coding RNAs
Name long intergenic non-protein coding RNA 162
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00162, also known as PICSAR (p38 inhibited cutaneous squamous cell carcinoma associated lincRNA) or NLC1‐C, has emerged as a multifunctional long non‐coding RNA implicated in a broad range of pathological conditions. In rheumatoid arthritis, LINC00162 is highly expressed in fibroblast‐like synoviocytes, where it acts as a competing endogenous RNA by sponging miR‑4701‑5p to promote cell proliferation, migration, invasion, and proinflammatory cytokine production—mechanisms that contribute to synovial invasion and joint destruction."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In several cancers, including cutaneous squamous cell carcinoma, pancreatic ductal adenocarcinoma, hepatocellular carcinoma, bladder cancer, and breast cancer, LINC00162 is upregulated and exerts oncogenic effects by sequestering tumor‑suppressive microRNAs such as miR‑485‑5p and miR‑573. This sponging relieves repression of targets including DUSP6, REV3L, PAQR4, and integrin subunits, which in turn activates key signaling pathways (e.g. ERK1/2, TGF‑β1/Smad, and PI3K/AKT/mTOR) to foster cell proliferation, migration, invasion, and even chemoresistance."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "2", "end_ref": "8"}]}, {"type": "t", "text": " In gastric cancer, high LINC00162 levels enhance sensitivity to the demethylating agent 5‑aza‑2′‑deoxycytidine by interacting with the splicing factor HNRNPH1 to alter the splicing of anti‑apoptotic variants such as BCL‑XL."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " In diabetic nephropathy, aberrant expression of LINC00162 contributes to renal pathology by binding and downregulating miR‑383, thereby upregulating HDAC9."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": " Moreover, in hypertrophic scar formation, LINC00162 binds miR‑485‑5p to activate the TGF‑β1/Smad signaling pathway, leading to abnormal fibroblast proliferation and excessive extracellular matrix deposition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Finally, in the reproductive context, nuclear accumulation of LINC00162 in spermatocytes and spermatogonia appears to repress miR‑320a and miR‑383 expression, a dysregulation associated with impaired spermatogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Collectively, these studies underscore the versatile role of LINC00162 as a competing endogenous RNA that modulates diverse biological processes. Its consistent overexpression in various malignancies and pathologic conditions positions LINC00162 as a promising biomarker and potential therapeutic target."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xuan Bi, Xing Hua Guo, Bi Yao Mo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA PICSAR promotes cell proliferation, migration and invasion of fibroblast-like synoviocytes by sponging miRNA-4701-5p in rheumatoid arthritis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "EBioMedicine (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ebiom.2019.11.024"}], "href": "https://doi.org/10.1016/j.ebiom.2019.11.024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31791845"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31791845"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Minna Piipponen, Liisa Nissinen, Mehdi Farshchian, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Noncoding RNA PICSAR Promotes Growth of Cutaneous Squamous Cell Carcinoma by Regulating ERK1/2 Activity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jid.2016.03.028"}], "href": "https://doi.org/10.1016/j.jid.2016.03.028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27049681"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27049681"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yu Lu, Min Wu, Jie Fu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The overexpression of long intergenic ncRNA00162 induced by RelA/p65 promotes growth of pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Prolif (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cpr.12805"}], "href": "https://doi.org/10.1111/cpr.12805"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32364285"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32364285"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Dan Wang, Xiaoqiang Zhou, Jing Yin, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Lnc-PICSAR contributes to cisplatin resistance by miR-485-5p/REV3L axis in cutaneous squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Open Life Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1515/biol-2020-0049"}], "href": "https://doi.org/10.1515/biol-2020-0049"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33817237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33817237"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yanhua Wang, Shengjian Tang, Jianping Lv "}, {"type": "b", "children": [{"type": "t", "text": "MicroRNA-573 inhibits cell proliferation, migration and invasion and is downregulated by PICSAR in cutaneous squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bosn J Basic Med Sci (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.17305/bjbms.2021.6301"}], "href": "https://doi.org/10.17305/bjbms.2021.6301"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34905724"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34905724"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Woo Joo Lee, Haein Ji, Seong Dong Jeong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00162 regulates cell proliferation and apoptosis by sponging PAQR4-targeting miR-485-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.30758"}], "href": "https://doi.org/10.1002/jcp.30758"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35491694"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35491694"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yu Shi, Peng Ye, Xinghua Long "}, {"type": "b", "children": [{"type": "t", "text": "Differential Expression Profiles of the Transcriptome in Breast Cancer Cell Lines Revealed by Next Generation Sequencing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000485344"}], "href": "https://doi.org/10.1159/000485344"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29176322"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29176322"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yunhai Luo, Stefanie L Morgan, Kevin C Wang "}, {"type": "b", "children": [{"type": "t", "text": "PICSAR: Long Noncoding RNA in Cutaneous Squamous Cell Carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Invest Dermatol (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jid.2016.04.013"}], "href": "https://doi.org/10.1016/j.jid.2016.04.013"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27450499"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27450499"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Liang Zong, Naoko Hattori, Yoshimi Yasukawa, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00162 confers sensitivity to 5-Aza-2'-deoxycytidine via modulation of an RNA splicing protein, HNRNPH1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-019-0792-8"}], "href": "https://doi.org/10.1038/s41388-019-0792-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30914798"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30914798"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "WenXing Fan, XiaoLing Wen, JinFeng Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00162 participates in the pathogenesis of diabetic nephropathy via modulating the miR-383/HDAC9 signalling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Artif Cells Nanomed Biotechnol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21691401.2020.1773487"}], "href": "https://doi.org/10.1080/21691401.2020.1773487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32677473"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32677473"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Sijia Xu, Wenxin Dong, Yu Shi "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA PICSAR binds to miR-485-5p and activates TGF-β1/Smad to promote abnormal proliferation of hypertrophic scar fibroblasts (HSFs) and excessive deposition of extracellular matrix (ECM)."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Mol Morphol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00795-021-00296-4"}], "href": "https://doi.org/10.1007/s00795-021-00296-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34255190"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34255190"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "M Lü, H Tian, Y-X Cao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Downregulation of miR-320a/383-sponge-like long non-coding RNA NLC1-C (narcolepsy candidate-region 1 genes) is associated with male infertility and promotes testicular embryonal carcinoma cell proliferation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cddis.2015.267"}], "href": "https://doi.org/10.1038/cddis.2015.267"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26539909"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26539909"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Xin Wang, Ruirui Zhang, Shuilian Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Super-Enhancer LncRNA LINC00162 Promotes Progression of Bladder Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "iScience (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.isci.2020.101857"}], "href": "https://doi.org/10.1016/j.isci.2020.101857"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33344916"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33344916"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jianping Lv, Wei Zhang, Yanhua Wang "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA PICSAR serves as a non-invasive biomarker for the diagnosis and prognosis of cutaneous squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Exp Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10238-021-00721-z"}], "href": "https://doi.org/10.1007/s10238-021-00721-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34043139"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34043139"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Xin Lou, Jun Li, Dong Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of five long noncoding RNAs expression as competing endogenous RNAs in regulating hepatoma carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.2468"}], "href": "https://doi.org/10.1002/cam4.2468"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31392826"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31392826"}]}]}]}
Synonyms NLC1-C, PICSAR, C21ORF113, PRED74, NCRNA00162, NLC1C
Proteins CU113_HUMAN
NCBI Gene ID 378825
API
Download Associations
Predicted Functions View LINC00162's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00162's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00162's ARCHS4 Predicted Functions.

Functional Associations

LINC00162 has 855 functional associations with biological entities spanning 4 categories (molecular profile, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 19 datasets.

Click the + buttons to view associations for LINC00162 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00162 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00162 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00162 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00162 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00162 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00162 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00162 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00162 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00162 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00162 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing LINC00162 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00162 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00162 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00162 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00162 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00162 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00162 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00162 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00162 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.