LINC00163 Gene

HGNC Family Non-coding RNAs
Name long intergenic non-protein coding RNA 163
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00163 has emerged as a functionally versatile long non‐coding RNA with context‐dependent roles in cancer. In gastric cancer, for example, LINC00163 acts as a competing endogenous RNA that sponges microRNA‐183, thereby relieving inhibition of A‐Kinase Anchoring Protein 12 (AKAP12) and enhancing its tumor‐suppressive effects against invasion and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In bladder cancer, its altered expression is incorporated into a ceRNA network and is significantly associated with tumor grade, disease stage, and overall survival, implicating LINC00163 as a potential prognostic marker in the oncogenic process."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In papillary thyroid cancer, LINC00163 is upregulated and appears to promote cell proliferation, migration, and invasion by modulating the epithelial–mesenchymal transition, indicating an oncogenic role in this context."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Conversely, in lung cancer, LINC00163 is markedly downregulated, and its overexpression suppresses tumor cell proliferation as well as migration and invasion, thereby functioning as a tumor suppressor."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Collectively, these findings illustrate that LINC00163 may serve as both a prognostic biomarker and a therapeutic target, with its dualistic role in tumorigenesis being highly dependent on the specific cancer type.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jun Zhang, Hai-Yan Piao, Shuai Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00163 inhibits the invasion and metastasis of gastric cancer cells as a ceRNA by sponging miR-183 to regulate the expression of AKAP12."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Clin Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10147-019-01604-w"}], "href": "https://doi.org/10.1007/s10147-019-01604-w"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31894433"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31894433"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zhipeng Xu, Chuang Wang, Xuebao Xiang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Characterization of mRNA Expression and Endogenous RNA Profiles in Bladder Cancer Based on The Cancer Genome Atlas (TCGA) Database."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Med Sci Monit (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.12659/MSM.915487"}], "href": "https://doi.org/10.12659/MSM.915487"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31020952"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31020952"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "P Gao, H Jiao, L Zhe, et al. "}, {"type": "b", "children": [{"type": "t", "text": "High expression of LINC0163 promotes progression of papillary thyroid cancer by regulating epithelial-mesenchymal transition MITF."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_202005_21335"}], "href": "https://doi.org/10.26355/eurrev_202005_21335"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32495885"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32495885"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiaotong Guo, Youlei Wei, Zhe Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00163 upregulation suppresses lung cancer development though transcriptionally increasing TCF21 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Cancer Res (2018)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30662806"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30662806"}]}]}]}
Synonyms C21ORF134, NLC1A, NLC1-A, NCRNA00163
NCBI Gene ID 727699
API
Download Associations
Predicted Functions View LINC00163's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00163's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00163's ARCHS4 Predicted Functions.

Functional Associations

LINC00163 has 583 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.

Click the + buttons to view associations for LINC00163 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00163 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00163 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00163 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00163 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00163 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Disease Associations diseases associated with LINC00163 gene/protein from the curated CTD Gene-Disease Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00163 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00163 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00163 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneRIF Biological Term Annotations biological terms co-occuring with LINC00163 gene in literature-supported statements describing functions of genes from the GeneRIF Biological Term Annotations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00163 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00163 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00163 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00163 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00163 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00163 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00163 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00163 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00163 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00163 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00163 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.