LINC00165 Gene

HGNC Family Non-coding RNAs
Name long intergenic non-protein coding RNA 165
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00165 has emerged as a regulatory non‐coding RNA with context‐dependent roles in human disease. In a genome‐wide association study investigating human narcolepsy, a candidate gene in the implicated region—initially designated NLC1‐A and now recognized as LINC00165—was found to harbor regulatory variants that significantly affect its expression in the hypothalamus, suggesting a protective effect against narcolepsy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, studies in gastric cancer have demonstrated that LINC00165 is upregulated in tumor tissues and cell lines, with its elevated expression correlating with advanced tumor stage, increased invasion depth, and poorer overall survival. Functional analyses revealed that LINC00165 promotes gastric cancer cell proliferation, migration, and invasion by serving as a scaffold to recruit Polycomb Repressive Complex 2, thereby facilitating the epithelial–mesenchymal transition. Moreover, its transcription is directly activated by STAT3 binding to its promoter region."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Minae Kawashima, Gen Tamiya, Akira Oka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomewide association analysis of human narcolepsy and a new resistance gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/505539"}], "href": "https://doi.org/10.1086/505539"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16826516"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16826516"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yan Jin, Peng Wu, Wenjing Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00165-induced by STAT3 exerts oncogenic properties via interaction with Polycomb Repressive Complex 2 to promote EMT in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.11.012"}], "href": "https://doi.org/10.1016/j.bbrc.2018.11.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30448060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30448060"}]}]}]}
Synonyms NCRNA00165, C21ORF135, NLC1B, NLC1-B
NCBI Gene ID 727701
API
Download Associations
Predicted Functions View LINC00165's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00165's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00165's ARCHS4 Predicted Functions.

Functional Associations

LINC00165 has 16 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, chemical, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for LINC00165 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.