| HGNC Family | Non-coding RNAs |
| Name | long intergenic non-protein coding RNA 165 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00165 has emerged as a regulatory non‐coding RNA with context‐dependent roles in human disease. In a genome‐wide association study investigating human narcolepsy, a candidate gene in the implicated region—initially designated NLC1‐A and now recognized as LINC00165—was found to harbor regulatory variants that significantly affect its expression in the hypothalamus, suggesting a protective effect against narcolepsy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, studies in gastric cancer have demonstrated that LINC00165 is upregulated in tumor tissues and cell lines, with its elevated expression correlating with advanced tumor stage, increased invasion depth, and poorer overall survival. Functional analyses revealed that LINC00165 promotes gastric cancer cell proliferation, migration, and invasion by serving as a scaffold to recruit Polycomb Repressive Complex 2, thereby facilitating the epithelial–mesenchymal transition. Moreover, its transcription is directly activated by STAT3 binding to its promoter region."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Minae Kawashima, Gen Tamiya, Akira Oka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomewide association analysis of human narcolepsy and a new resistance gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1086/505539"}], "href": "https://doi.org/10.1086/505539"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16826516"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16826516"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yan Jin, Peng Wu, Wenjing Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00165-induced by STAT3 exerts oncogenic properties via interaction with Polycomb Repressive Complex 2 to promote EMT in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.11.012"}], "href": "https://doi.org/10.1016/j.bbrc.2018.11.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30448060"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30448060"}]}]}]}
|
| Synonyms | NCRNA00165, C21ORF135, NLC1B, NLC1-B |
| NCBI Gene ID | 727701 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00165 has 16 functional associations with biological entities spanning 4 categories (organism, disease, phenotype or trait, chemical, gene, protein or microRNA) extracted from 4 datasets.
Click the + buttons to view associations for LINC00165 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00165 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |