LINC00226 Gene

Name long intergenic non-protein coding RNA 226
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA LINC00226 has emerged as a potential regulatory molecule implicated in diverse biological processes and diseases. In penile cancer, LINC00226 is mapped to genomic regions that are frequently affected by copy number alterations at human papillomavirus (HPV) integration sites, suggesting that alterations in its dosage or regulation could contribute to the epigenetic and transcriptional dysregulation underlying tumor development and progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in chronic lymphocytic leukemia, LINC00226 is located within chromosomal segments that undergo deletions in a subset of cases, indicating that changes in this lncRNA’s genomic context might be associated with disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the context of human male germ cells, expression analyses across multiple studies have consistently identified LINC00226 as differentially expressed, highlighting its potential involvement in spermatogenesis and germ cell function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Furthermore, in pancreatic ductal adenocarcinoma, LINC00226 was among a set of lncRNAs that exhibited aberrant expression when comparing tumor cells to normal cells, suggesting that it may serve as a molecular marker or play a role in the cellular processes driving tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings support a role for LINC00226 in modulating gene expression and cellular pathways through its altered copy number or expression levels in both oncologic and reproductive contexts. However, the precise molecular mechanisms by which LINC00226 contributes to disease development and progression remain to be fully elucidated.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Juliana Macedo, Elis Silva, Leudivan Nogueira, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genomic profiling reveals the pivotal role of hrHPV driving copy number and gene expression alterations, including mRNA downregulation of TP53 and RB1 in penile cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Carcinog (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/mc.23185"}], "href": "https://doi.org/10.1002/mc.23185"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32212199"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32212199"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Rachel A Harris, Jadd M Stevens, Diane L Pickering, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Frequency, variations, and prognostic implications of chromosome 14q32 deletions in chronic lymphocytic leukemia."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Leuk Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.leukres.2021.106665"}], "href": "https://doi.org/10.1016/j.leukres.2021.106665"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34293710"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34293710"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Meghali Joshi, Singh Rajender "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Reprod Biol Endocrinol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12958-020-00660-6"}], "href": "https://doi.org/10.1186/s12958-020-00660-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33126901"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33126901"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Xiang Yu, Yang Lin, Wu Sui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of distinct long noncoding RNA transcriptional fingerprints in pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Med (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cam4.1027"}], "href": "https://doi.org/10.1002/cam4.1027"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28220683"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28220683"}]}]}]}
Synonyms C14ORF97, NCRNA00226
NCBI Gene ID 338004
API
Download Associations
Predicted Functions View LINC00226's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00226's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00226's ARCHS4 Predicted Functions.

Functional Associations

LINC00226 has 512 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC00226 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00226 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00226 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00226 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00226 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00226 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00226 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00226 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00226 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00226 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00226 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00226 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00226 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00226 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.