LINC00229 Gene

Name long intergenic non-protein coding RNA 229
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a study evaluating differentially expressed long noncoding RNAs (lncRNAs) in lung tissues from patients with chronic obstructive pulmonary disease (COPD) versus non-COPD controls, LINC00229 was identified as one of the five significantly down‐regulated lncRNAs (1). Although the primary focus of the research was to investigate the role of lncRNA TUG1 in mediating cellular proliferation and fibrotic responses under TGF-β treatment, the marked decrease in LINC00229 expression in COPD lung tissues suggests that it may be involved in the deregulation of molecular pathways associated with the disease. Its differential expression highlights the potential utility of LINC00229, alongside other lncRNAs, as a biomarker for COPD diagnosis and possibly as a contributor to disease pathogenesis by reflecting alterations in pulmonary cellular functions."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Wenxiang Tang, Zhenyu Shen, Jiang Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Screening of long non-coding RNA and TUG1 inhibits proliferation with TGF-β induction in patients with COPD."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Chron Obstruct Pulmon Dis (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/COPD.S109570"}], "href": "https://doi.org/10.2147/COPD.S109570"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27932875"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27932875"}]}]}]}
Synonyms NCRNA00229, C22ORF10, DJ474I12.C22.2
NCBI Gene ID 414351
API
Download Associations
Predicted Functions View LINC00229's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00229's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00229's ARCHS4 Predicted Functions.

Functional Associations

LINC00229 has 595 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC00229 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00229 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00229 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00229 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00229 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00229 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00229 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00229 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00229 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00229 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00229 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00229 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00229 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00229 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.