LINC00240 Gene

Name long intergenic non-protein coding RNA 240
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00240 is a long non‐coding RNA that has emerged as an important regulator in multiple pathological conditions, particularly in various cancers, by acting predominantly as a competing endogenous RNA (ceRNA) that sponges specific microRNAs. In cervical cancer, for example, LINC00240 is markedly upregulated and promotes tumor growth, migration, and invasion through sequestering miR‐124-3p, which leads to enhanced STAT3 expression and subsequent suppression of antitumor immune responses mediated by natural killer T cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in lung cancer, LINC00240 functions as a molecular sponge for miR‐7-5p, resulting in the derepression of EGFR and thereby stimulating cell invasion and migration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In gastric cancer, studies have revealed that elevated LINC00240 expression is associated with advanced disease features. It exerts its oncogenic role by modulating different axes – one study demonstrated that LINC00240 sponges miR‐338-5p, leading to increased METTL3 expression and consequently promoting cell proliferation and migration"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ", while another highlighted a LINC00240/miR‐124-3p/DNMT3B (or miR‐99a-5p/IGF1R) axis contributing to gastric tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In hepatocellular carcinoma, LINC00240 is upregulated and facilitates cell viability, migration, and invasion by sponging miR‐4465, thereby activating the HGF/c-MET signaling pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " In nasopharyngeal carcinoma, high LINC00240 levels contribute to enhanced proliferation, invasion, migration, and angiogenesis by sequestering miR‐26a-5p, which in turn leads to the upregulation of EZH2 and modulation of cell cycle regulators."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond these oncological settings, LINC00240 has also been implicated in other pathological conditions. In intervertebral disc degeneration, although data are more limited and partly complicated by nomenclature discrepancies, knockdown studies suggest that modulating LINC00240 may affect nucleus pulposus cell proliferation and apoptosis, hinting at a potential role in spinal degeneration."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " In esophageal squamous cell carcinoma, disruption of the miR‐26b-mediated crosstalk involving LINC00240 has been associated with altered extracellular matrix interactions and wound response, reflecting its broader regulatory function as a ceRNA."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Furthermore, in the context of endometrial receptivity, LINC00240 is part of a ceRNA network with miR‐182 and NDRG1, which may be critical for successful embryo implantation"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ", and it has also been identified as a potential biomarker in ischemic stroke."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that LINC00240 functions primarily as an oncogenic regulator and a potential biomarker by sponging various microRNAs to modulate key signaling pathways involved in cellular proliferation, migration, invasion, and apoptosis across different disease contexts, thereby representing an attractive target for future therapeutic interventions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yan Zhang, Xing Li, Jun Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Natural killer T cell cytotoxic activity in cervical cancer is facilitated by the LINC00240/microRNA-124-3p/STAT3/MICA axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.canlet.2019.12.038"}], "href": "https://doi.org/10.1016/j.canlet.2019.12.038"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31904481"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31904481"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Gwan Woo Ku, Yujin Kang, Seong-Lan Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00240 suppresses invasion and migration in non-small cell lung cancer by sponging miR-7-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Cancer (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12885-020-07755-8"}], "href": "https://doi.org/10.1186/s12885-020-07755-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33422052"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33422052"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Guoping Wang, Zhongchen Zhang, Chenmei Xia "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00240 promotes gastric cancer progression via modulating miR-338-5p/METTL3 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2021.1983276"}], "href": "https://doi.org/10.1080/21655979.2021.1983276"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34842045"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34842045"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yuanyuan Li, Jing Yan, Yiting Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00240 promotes gastric cancer cell proliferation, migration and EMT via the miR-124-3p / DNMT3B axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Biochem Funct (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cbf.3551"}], "href": "https://doi.org/10.1002/cbf.3551"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32526811"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32526811"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "W-J Bu, Z Fang, W-L Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00240 sponges miR-4465 to promote proliferation, migration, and invasion of hepatocellular carcinoma cells via HGF/c-MET signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_202010_23397"}], "href": "https://doi.org/10.26355/eurrev_202010_23397"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33155201"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33155201"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Xing Chen, Guixiang Wu, Jing Qing, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00240 knockdown inhibits nasopharyngeal carcinoma progress by targeting miR-26a-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.24424"}], "href": "https://doi.org/10.1002/jcla.24424"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35421264"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35421264"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Min Zhu, Xiaoling Yan, Yin Zhao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA LINC00284 promotes nucleus pulposus cell proliferation and ECM synthesis via regulation of the miR‑205‑3p/Wnt/β‑catenin axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2022.12695"}], "href": "https://doi.org/10.3892/mmr.2022.12695"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35322864"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35322864"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Shuang Yang, Qianqian Ning, Guobin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction of differential mRNA-lncRNA crosstalk networks based on ceRNA hypothesis uncover key roles of lncRNAs implicated in esophageal squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.13828"}], "href": "https://doi.org/10.18632/oncotarget.13828"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27966444"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27966444"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Seong-Lan Yu, Tae-Hyun Kim, Young-Hyun Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptomic analysis and competing endogenous RNA network in the human endometrium between proliferative and mid-secretory phases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Ther Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/etm.2021.10092"}], "href": "https://doi.org/10.3892/etm.2021.10092"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33968190"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33968190"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yanhua Zheng, Shaopeng Sun, Miao Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of potential hub-lncRNAs in ischemic stroke based on Subpathway-LNCE method."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28554"}], "href": "https://doi.org/10.1002/jcb.28554"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30882937"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30882937"}]}]}]}
Synonyms NCRNA00240, BA373D17.1, C6ORF41
NCBI Gene ID 100133205
API
Download Associations
Predicted Functions View LINC00240's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00240's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00240's ARCHS4 Predicted Functions.

Functional Associations

LINC00240 has 1,843 functional associations with biological entities spanning 5 categories (molecular profile, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for LINC00240 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00240 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00240 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00240 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00240 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with LINC00240 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
dbGAP Gene-Trait Associations traits associated with LINC00240 gene in GWAS and other genetic association datasets from the dbGAP Gene-Trait Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00240 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00240 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00240 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00240 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00240 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00240 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00240 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00240 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00240 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00240 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00240 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00240 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00240 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00240 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00240 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00240 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00240 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.