| Name | long intergenic non-protein coding RNA 242 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00242 has emerged as a multifunctional long non‐coding RNA that primarily exerts oncogenic functions across several disease contexts. In gastric cancer, LINC00242 is highly expressed and promotes tumorigenesis by enhancing aerobic glycolysis and cell proliferation. Mechanistically, one study demonstrated that LINC00242 acts as a competing endogenous RNA (ceRNA) by binding to miR‑1‑3p and thereby upregulating G6PD, which facilitates the Warburg effect and tumor growth."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In a separate investigation on gastric cancer, LINC00242 was shown to interact with miR‑141, leading to the upregulation of FOXC1, with consequent enhancements in cell viability, migration, invasion, and angiogenic potential, further underpinning its tumor‐promoting role."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Beyond gastric cancer, LINC00242 has also been identified as a key enhancer RNA in pancreatic adenocarcinoma. Its expression strongly correlates with that of its target gene, PHF10, and alterations in LINC00242 levels are associated with distinct clinicopathological features and variations in immune cell infiltration, suggesting that it modulates the tumor microenvironment and patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in the context of spondyloarthropathy/ankylosing spondylitis, LINC00242 was identified as one of the hub long non‑coding RNAs within a competitive regulatory network that impacts critical signaling sub‑pathways, including those in the MAPK, chemokine, and HIF‑1 pathways. This finding implies that beyond its oncogenic role, LINC00242 may also contribute to inflammatory processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, LINC00242 predominantly functions as an oncogenic regulator through its activity as a molecular sponge for specific microRNAs. This interaction relieves microRNA‐mediated repression of downstream targets—such as G6PD, FOXC1, and PHF10—thereby promoting enhanced aerobic glycolysis, cellular proliferation, metastasis, and even modulating the immune milieu. These multifaceted roles highlight LINC00242 as a promising candidate for therapeutic targeting in various cancers and potentially in inflammatory conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Peng Deng, Kai Li, Feng Gu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00242/miR-1-3p/G6PD axis regulates Warburg effect and affects gastric cancer proliferation and apoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s10020-020-00259-y"}], "href": "https://doi.org/10.1186/s10020-020-00259-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33514309"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33514309"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiongdong Zhong, Xianchang Yu, Xiaoyan Wen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Activation of the LINC00242/miR-141/FOXC1 axis underpins the development of gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-020-01369-7"}], "href": "https://doi.org/10.1186/s12935-020-01369-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32587479"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32587479"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wen Tong, Liuyang Zhu, Yi Bai, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Enhancer RNA LINC00242-Induced Expression of PHF10 Drives a Better Prognosis in Pancreatic Adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Oncol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fonc.2021.795090"}], "href": "https://doi.org/10.3389/fonc.2021.795090"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35127503"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35127503"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ming Ding, Ting-Jin Guan, Chuan-Yin Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of pathways significantly associated with spondyloarthropathy/ankylosing spondylitis using the sub‑pathway method."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2018.9395"}], "href": "https://doi.org/10.3892/mmr.2018.9395"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30132545"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30132545"}]}]}]}
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| Synonyms | C6ORF122, NCRNA00242, DJ266L20.5 |
| Proteins | CF122_HUMAN |
| NCBI Gene ID | 401288 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00242 has 973 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.
Click the + buttons to view associations for LINC00242 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00242 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of LINC00242 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00242 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00242 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00242 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00242 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00242 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00242 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00242 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00242 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00242 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00242 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00242 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00242 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00242 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00242 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00242 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00242 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00242 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00242 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00242 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00242 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |