| Name | long intergenic non-protein coding RNA 244 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNAs (lncRNAs) have emerged as key epigenetic regulators in diverse biological processes and diseases, including cancer. Notably, LINC00244 has been shown to function as a tumor suppressor in hepatocellular carcinoma by downregulating programmed cell death ligand 1 (PD‐L1) expression. This downregulation leads to reduced proliferation, invasion, metastasis, and epithelial–mesenchymal transition (EMT), correlating with improved clinical outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In the broader context of lncRNA research, additional studies have demonstrated that other lncRNAs are involved in modulating tumor cell phenotypes, drug resistance, and differentiation processes in various malignancies as well as congenital malformations. For example, distinct lncRNAs have been reported to promote leukemic and megakaryocyte differentiation through intricate signaling networks"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ", while circulating lncRNA signatures have shown promise as diagnostic biomarkers in pancreatic ductal adenocarcinoma precursors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Moreover, comprehensive genomic analyses have identified key mRNAs, miRNAs, and candidate genes that further emphasize the multifaceted regulatory roles of non-coding regions in tumor progression and developmental anomalies."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Thus, while LINC00244’s specific role in suppressing PD‐L1-mediated oncogenic pathways underscores its therapeutic potential in hepatocellular carcinoma, the collective evidence from related studies highlights the overall importance of lncRNAs as versatile regulators in both cancer biology and developmental disorders.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhijia Sun, Chunyuan Xue, Jiangbo Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00244 suppresses cell growth and metastasis in hepatocellular carcinoma by downregulating programmed cell death ligand 1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bioengineered (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/21655979.2022.2050073"}], "href": "https://doi.org/10.1080/21655979.2022.2050073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35266439"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35266439"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "X Sun, B Lu, B Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel function of the chromosome 7 open reading frame 41 gene to promote leukemic megakaryocyte differentiation by modulating TPA-induced signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood Cancer J (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/bcj.2014.18"}], "href": "https://doi.org/10.1038/bcj.2014.18"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24681962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24681962"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xingyan Yang, Quankuan Shen, Xierzhatijiang Sulaiman, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identity-by-descent refines mapping of candidate regions for preaxial polydactyly II /III in a large Chinese pedigree."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hereditas (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s41065-017-0040-6"}], "href": "https://doi.org/10.1186/s41065-017-0040-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28690477"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28690477"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Sherry Bhalla, Harpreet Kaur, Anjali Dhall, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Prediction and Analysis of Skin Cancer Progression using Genomics Profiles of Patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-019-52134-4"}], "href": "https://doi.org/10.1038/s41598-019-52134-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31673075"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31673075"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "H C Heus, A Hing, M J van Baren, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A physical and transcriptional map of the preaxial polydactyly locus on chromosome 7q36."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (1999)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1006/geno.1999.5796"}], "href": "https://doi.org/10.1006/geno.1999.5796"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "10329000"}], "href": "https://pubmed.ncbi.nlm.nih.gov/10329000"}]}]}]}
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| Synonyms | C7ORF4, NCRNA00244 |
| NCBI Gene ID | 64433 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00244 has 476 functional associations with biological entities spanning 4 categories (molecular profile, organism, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.
Click the + buttons to view associations for LINC00244 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00244 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00244 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00244 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00244 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00244 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00244 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00244 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00244 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00244 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00244 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00244 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00244 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00244 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00244 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00244 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |