LINC00254 Gene

Name long intergenic non-protein coding RNA 254
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nAlthough the provided abstracts do not explicitly mention LINC00254, they offer insights into related RNA‐mediated regulatory pathways that may in the future provide context for understanding LINC00254’s potential function. In the first study, miR‑471‑5p expressed in Sertoli cells is shown to regulate the clearance of apoptotic germ cells via LC3‑associated phagocytosis (LAP); this mechanism is critical for proper spermatogenesis and male fertility as it involves modulation of autophagy‐related proteins such as Dock180, LC3, Atg12, Becn1, Rab5, and Rubicon in a hormone‐regulated manner."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn the second study, attention is directed toward the imbalance of macrophage polarization in diabetic cardiomyopathy (DCM), with the miR‑471‑3p/SIRT1 pathway implicated in regulating the M1/M2 ratio during disease progression. This study highlights the emerging role of small regulatory RNAs in modulating inflammatory responses associated with cardiomyopathy."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nWhile neither study directly addresses LINC00254, the delineation of miR‑471 family members in key processes—apoptotic cell clearance and inflammatory modulation—suggests that similar noncoding RNAs like LINC00254 might participate in analogous regulatory networks. Future investigations are needed to determine whether LINC00254 interacts with pathways involving autophagy machinery or macrophage polarization, potentially expanding our understanding of its role in cellular homeostasis and disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Subbarayalu Panneerdoss, Suryavathi Viswanadhapalli, Nourhan Abdelfattah, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cross-talk between miR-471-5p and autophagy component proteins regulates LC3-associated phagocytosis (LAP) of apoptotic germ cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-017-00590-9"}], "href": "https://doi.org/10.1038/s41467-017-00590-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28928467"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28928467"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Guangqi Liu, Dan Yan, Liu Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The effect of miR-471-3p on macrophage polarization in the development of diabetic cardiomyopathy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Life Sci (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.lfs.2020.118989"}], "href": "https://doi.org/10.1016/j.lfs.2020.118989"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33417962"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33417962"}]}]}]}
Synonyms C16ORF32, NCRNA00254
NCBI Gene ID 64735
API
Download Associations
Predicted Functions View LINC00254's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00254's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00254's ARCHS4 Predicted Functions.

Functional Associations

LINC00254 has 535 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 13 datasets.

Click the + buttons to view associations for LINC00254 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00254 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00254 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00254 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00254 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00254 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00254 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00254 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00254 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
HPA Tissue Protein Expression Profiles tissues with high or low expression of LINC00254 protein relative to other tissues from the HPA Tissue Protein Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00254 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00254 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00254 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00254 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.