LINC00269 Gene

Name long intergenic non-protein coding RNA 269
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Although none of the provided abstracts describe LINC00269 specifically, they do characterize related long intergenic non‐coding RNAs (lincRNAs) whose functional attributes may offer insight into similar mechanisms. One study focused on LINC00629 – a lincRNA that is highly expressed in placental and other reproductive tissues and is present in a broad panel of cancer cell lines. Functional assays in a choriocarcinoma cell model demonstrated that overexpression of the three‐exon isoform of LINC00629 significantly reduced cell migration and invasion, suggesting a potential tumor‐suppressive role pertinent to human reproduction and tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In a separate study, a machine learning–assisted network inference algorithm was employed to identify a class of cancer genes that act as “signal linkers” – genes that coordinate oncogenic signals despite not being markedly mutated or differentially expressed. Although LINC00269 was not directly mentioned, this work highlights the importance of non‑canonical regulators in cancer etiology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, an investigation into competing endogenous RNA (ceRNA) networks in papillary renal cell carcinoma (PRCC) revealed that lncRNAs can integrate with microRNAs and mRNAs to modulate tumor biology. While the ceRNA network study primarily identified lncRNAs such as MEG3 and PWRN1 as key nodal regulators, its findings underscore the broader concept that lncRNAs—including, by extension, those like LINC00269—might influence tumor progression and serve as potential prognostic biomarkers."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, even though LINC00269 was not directly analyzed in these studies, related lincRNAs (e.g., LINC00629) have been shown to impair cellular migration and invasion, implying a tumor‐suppressive function in reproductive tissues and cancer models. Furthermore, the emerging roles of lncRNAs in oncogenic signal linking and ceRNA network modulation suggest that LINC00269, if similarly active, may contribute to the regulation of cancer progression and reproductive functions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bruna Rodrigues Muys, Júlio Cesar Cetrulo Lorenzi, Dalila Luciola Zanette, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Placenta-Enriched LincRNAs MIR503HG and LINC00629 Decrease Migration and Invasion Potential of JEG-3 Cell Line."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0151560"}], "href": "https://doi.org/10.1371/journal.pone.0151560"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27023770"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27023770"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mehrab Ghanat Bari, Choong Yong Ung, Cheng Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Machine Learning-Assisted Network Inference Approach to Identify a New Class of Genes that Coordinate the Functionality of Cancer Networks."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-017-07481-5"}], "href": "https://doi.org/10.1038/s41598-017-07481-5"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28765560"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28765560"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Qing Luo, Meng Cui, Qinfu Deng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of differentially expressed profiles and reconstruction of a competing endogenous RNA network in papillary renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2019.10138"}], "href": "https://doi.org/10.3892/mmr.2019.10138"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30957192"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30957192"}]}]}]}
Synonyms CXORF62, NCRNA00269
Proteins CX062_HUMAN
NCBI Gene ID 100996279
API
Download Associations
Predicted Functions View LINC00269's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00269's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00269's ARCHS4 Predicted Functions.

Functional Associations

LINC00269 has 25 functional associations with biological entities spanning 6 categories (organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.

Click the + buttons to view associations for LINC00269 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00269 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00269 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00269 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00269 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00269 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00269 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00269 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.