| Name | long intergenic non-protein coding RNA 290 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00290 is a long intergenic noncoding RNA that has emerged as a candidate gene with potential roles in both oncogenic processes and tissue-specific inflammatory responses. A genetic variant located near LINC00290 was found to exhibit a significant sex‐specific association with cerebrospinal fluid amyloid‐β42 levels, suggesting that this lncRNA locus may contribute to molecular pathways underlying neurodegenerative endophenotypes, particularly in Alzheimer’s disease."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In the context of cancer, especially cervical carcinogenesis, HPV DNA integration events have been shown to dysregulate LINC00290, with transcriptomic analyses implicating it as a potential driver gene."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, integrated analyses in pulpitis have identified LINC00290 as a component of a competing endogenous RNA network associated with inflammation, positioning it as a promising diagnostic biomarker for this condition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In pediatric adrenocortical tumors, focal deletions in the genomic region containing LINC00290 further suggest that loss or deregulation of this lncRNA may play a role in tumorigenesis, potentially acting as a tumor suppressor or influencing oncogenic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yuetiva Deming, Logan Dumitrescu, Lisa L Barnes, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Sex-specific genetic predictors of Alzheimer's disease biomarkers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Acta Neuropathol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s00401-018-1881-4"}], "href": "https://doi.org/10.1007/s00401-018-1881-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29967939"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29967939"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Liyuan Zhou, Qiongzi Qiu, Qing Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long-read sequencing unveils high-resolution HPV integration and its oncogenic progression in cervical cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41467-022-30190-1"}], "href": "https://doi.org/10.1038/s41467-022-30190-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35538075"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35538075"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Liu Liu, Tianyi Wang, Dingming Huang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of Differentially Expressed Genes in Clinically Diagnosed Irreversible Pulpitis by Multiplatform Data Integration Using a Robust Rank Aggregation Approach."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Endod (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.joen.2021.07.007"}], "href": "https://doi.org/10.1016/j.joen.2021.07.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34260959"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34260959"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Eric Letouzé, Roberto Rosati, Heloisa Komechen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SNP array profiling of childhood adrenocortical tumors reveals distinct pathways of tumorigenesis and highlights candidate driver genes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Endocrinol Metab (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1210/jc.2012-1184"}], "href": "https://doi.org/10.1210/jc.2012-1184"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22539591"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22539591"}]}]}]}
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| Synonyms | NCRNA00290 |
| NCBI Gene ID | 728081 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00290 has 277 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 14 datasets.
Click the + buttons to view associations for LINC00290 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00290 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00290 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00290 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00290 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00290 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00290 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00290 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00290 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00290 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00290 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00290 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00290 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00290 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00290 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |