LINC00301 Gene

Name long intergenic non-protein coding RNA 301
Description Predicted to be located in membrane. [provided by Alliance of Genome Resources, Mar 2025]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00301 is a long noncoding RNA with multifaceted roles in disease pathogenesis and diagnosis. In non‐small cell lung cancer, LINC00301 is highly expressed and functions as an oncogene by promoting cellular proliferation, facilitating cell cycle progression, enhancing migration and invasion, and suppressing apoptosis. It also contributes to an immunosuppressive microenvironment by increasing regulatory T cells while reducing CD8⁺ T cells, and mechanistic studies reveal that it acts via FOXC1‐dependent transcriptional regulation, interacting with EZH2 and affecting downstream effectors such as HIF1α."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, integrated data‐mining approaches in brain tumor datasets have identified LINC00301 as part of a lncRNA signature that discriminates cancerous from normal tissues, suggesting a broader role in tumor biology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Analysis of competing endogenous RNA networks in osteonecrosis of the femoral head further designates LINC00301 as a highly connected node potentially involved in the regulation of skeletal development‐related processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, LINC00301 has been incorporated into a panel of testis‐specific extracellular vesicle lncRNAs, which has demonstrated high sensitivity and specificity for predicting the presence of testicular spermatozoa in nonobstructive azoospermia. This finding highlights its promise as a noninvasive biomarker with potential clinical utility in male infertility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies underscore the multifaceted roles of LINC00301 in promoting tumorigenesis, modulating immune responses, and serving as a potential diagnostic indicator across diverse pathological conditions.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Cheng-Cao Sun, Wei Zhu, Shu-Jun Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "FOXC1-mediated LINC00301 facilitates tumor progression and triggers an immune-suppressing microenvironment in non-small cell lung cancer by regulating the HIF1α pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genome Med (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13073-020-00773-y"}], "href": "https://doi.org/10.1186/s13073-020-00773-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32878637"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32878637"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Paolo Cremaschi, Roberta Carriero, Stefania Astrologo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An Association Rule Mining Approach to Discover lncRNAs Expression Patterns in Cancer Datasets."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2015/146250"}], "href": "https://doi.org/10.1155/2015/146250"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26273587"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26273587"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ning Han, Zengchun Li "}, {"type": "b", "children": [{"type": "t", "text": "Non-coding RNA Identification in Osteonecrosis of the Femoral Head Using Competitive Endogenous RNA Network Analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Orthop Surg (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/os.12834"}], "href": "https://doi.org/10.1111/os.12834"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33749138"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33749138"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yun Xie, Jiahui Yao, Xinzong Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A panel of extracellular vesicle long noncoding RNAs in seminal plasma for predicting testicular spermatozoa in nonobstructive azoospermia patients."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Reprod (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/humrep/deaa184"}], "href": "https://doi.org/10.1093/humrep/deaa184"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32914196"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32914196"}]}]}]}
Synonyms NCRNA00301, C11ORF64
Proteins NC301_HUMAN
NCBI Gene ID 283197
API
Download Associations
Predicted Functions View LINC00301's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00301's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00301's ARCHS4 Predicted Functions.

Functional Associations

LINC00301 has 454 functional associations with biological entities spanning 7 categories (molecular profile, organism, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for LINC00301 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00301 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00301 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00301 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00301 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00301 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00301 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00301 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00301 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00301 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing LINC00301 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00301 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00301 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00301 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00301 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00301 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00301 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00301 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00301 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00301 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00301 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00301 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00301 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.