| Name | long intergenic non-protein coding RNA 303 |
| Summary |
{"type": "root", "children": [{"type": "t", "text": "<head>\n <meta charset=\"UTF-8\">\n <title>Summary of LINC00303 Function</title>\n </head>\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n LINC00303 is emerging as a potentially important long non‐coding RNA situated within complex gene regulatory architectures. In one study investigating prostate cancer risk, genome‐wide eQTL analyses identified multiple differentially expressed lncRNAs linked to PrCa‐risk variants, suggesting that non‐coding transcripts like LINC00303 may contribute to the regulation of gene expression in prostate tissue."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Although not explicitly dissected in the context of cryptorchidism, related work in testicular tissue demonstrates that hormonal intervention with gonadotropin releasing hormone agonist (GnRHa) affects the repertoire of testicular lncRNAs, underscoring a broader role for lncRNA‐mediated epigenetic regulation in reproductive development and cell differentiation."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in an in silico analysis of three‐dimensional chromatin architecture involving the human renin gene, LINC00303 was identified as a component of a regulatory archipelago. Positioned in a topologically associated domain (TAD1) along with other genes (e.g., ZC3H11A, SNRPE, and SOX13), LINC00303 may contribute to the coordinated regulation of gene expression and cell identity through interactions with super‐enhancers and chromatin insulators. This positioning suggests that LINC00303 might play a role in maintaining proper chromatin domains and potentially influence age‐dependent as well as tissue‐specific transcriptional programs."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings imply that LINC00303 may participate in epigenetic regulatory processes that underlie both normal developmental functions and disease-related alterations in gene expression. Future functional studies are warranted to define its precise molecular mechanisms across these diverse biological contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Melissa S DeRycke, Melissa C Larson, Asha A Nair, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An expanded variant list and assembly annotation identifies multiple novel coding and noncoding genes for prostate cancer risk using a normal prostate tissue eQTL data set."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0214588"}], "href": "https://doi.org/10.1371/journal.pone.0214588"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30958860"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30958860"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Faruk Hadziselimovic, Gilvydas Verkauskas, Beata Vincel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Testicular expression of long non-coding RNAs is affected by curative GnRHa treatment of cryptorchidism."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Basic Clin Androl (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12610-019-0097-3"}], "href": "https://doi.org/10.1186/s12610-019-0097-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31890219"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31890219"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Timothy A Donlon, Brian J Morris "}, {"type": "b", "children": [{"type": "t", "text": "In silico analysis of human renin gene-gene interactions and neighborhood topologically associated domains suggests breakdown of insulators contribute to ageing-associated diseases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biogerontology (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10522-019-09834-1"}], "href": "https://doi.org/10.1007/s10522-019-09834-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31520345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31520345"}]}]}]}
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| Synonyms | C1ORF157, NCRNA00303 |
| Proteins | CA157_HUMAN |
| NCBI Gene ID | 284573 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00303 has 534 functional associations with biological entities spanning 7 categories (molecular profile, organism, chemical, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 21 datasets.
Click the + buttons to view associations for LINC00303 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00303 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00303 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00303 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00303 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00303 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00303 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00303 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00303 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00303 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00303 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00303 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00303 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00303 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00303 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00303 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00303 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00303 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00303 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00303 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00303 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00303 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |