LINC00310 Gene

Name long intergenic non-protein coding RNA 310
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Deregulation of the long non‐coding RNA LINC00310 has emerged from multiple studies as a potential oncogenic driver and prognostic biomarker in diverse clinical settings. In breast cancer, LINC00310 expression increases with disease progression and poor patient survival, and functional experiments using CRISPR/Cas9 knockout and rescue approaches have demonstrated that LINC00310 promotes cell proliferation and in vivo tumor growth by up‐regulating the c-Myc pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, LINC00310 is part of a gene signature associated with recurrence in breast invasive carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "as well as being linked with recurrence in papillary thyroid cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similar oncogenic functions appear in other tumor types; for example, during the malignant transformation of human bronchial epithelial cells exposed to glycidyl methacrylate, LINC00310 is up‐regulated in later stages along with its target gene C-Myc."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Furthermore, in buccal mucosa squamous cell carcinoma, LINC00310 exhibits marked expression alterations and is associated with poorer clinical outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Beyond its role in cancer, genome‐wide association analyses have identified LINC00310 as a candidate gene expressed in arterial tissues and linked to the risk of spontaneous coronary artery dissection"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while integrative ceRNA network studies in Duchenne muscular dystrophy have uncovered LINC00310 as a hub potentially contributing to the increased tumorigenesis observed in this condition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings suggest that LINC00310 functions as an oncogenic lncRNA by modulating key regulatory pathways—most notably via c-Myc—and that its aberrant expression is closely associated with tumor recurrence, progression, and adverse clinical outcomes. Accordingly, LINC00310 holds promise not only as a prognostic marker in various cancers but also as a potential target for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Juan Li, Wanxin Peng, Lutao Du, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The oncogenic potentials and diagnostic significance of long non-coding RNA LINC00310 in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.13750"}], "href": "https://doi.org/10.1111/jcmm.13750"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29993199"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29993199"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hairong Liu, Juan Li, Pratirodh Koirala, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs as prognostic markers in human breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7828"}], "href": "https://doi.org/10.18632/oncotarget.7828"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26942882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26942882"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ben Ma, Tian Liao, Duo Wen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-coding RNA 271 is predictive of a poorer prognosis of papillary thyroid cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep36973"}], "href": "https://doi.org/10.1038/srep36973"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27833134"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27833134"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shunpeng Ma, Quankai Wang, Guangyun Xie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Role of LINC00310 in the glycidyl methacrylate-induced malignant transformation of human bronchial epithelial cell]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Wei Sheng Yan Jiu (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.19813/j.cnki.weishengyanjiu.2020.05.003"}], "href": "https://doi.org/10.19813/j.cnki.weishengyanjiu.2020.05.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33070810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33070810"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kinjal D Patel, Hemangini H Vora, Trupti I Trivedi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptome profiling and pathway analysis in squamous cell carcinoma of buccal mucosa."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Mol Pathol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexmp.2020.104378"}], "href": "https://doi.org/10.1016/j.yexmp.2020.104378"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31930966"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31930966"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Tamiel N Turley, Megan M O'Byrne, Matthew L Kosel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA Cardiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jamacardio.2020.0872"}], "href": "https://doi.org/10.1001/jamacardio.2020.0872"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32374345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32374345"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaoxue Xu, Yuehan Hao, Shuang Xiong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of Long Non-coding RNA-Associated Competing Endogenous RNA Network in Duchenne Muscular Dystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Interdiscip Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12539-020-00388-2"}], "href": "https://doi.org/10.1007/s12539-020-00388-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32876881"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32876881"}]}]}]}
Synonyms NCRNA00310, C21ORF82
Proteins CU082_HUMAN
NCBI Gene ID 114036
API
Download Associations
Predicted Functions View LINC00310's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00310's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00310's ARCHS4 Predicted Functions.

Functional Associations

LINC00310 has 1,437 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 26 datasets.

Click the + buttons to view associations for LINC00310 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00310 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00310 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00310 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00310 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00310 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00310 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00310 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00310 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00310 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD High Level Gene-Disease Associations diseases associated with LINC00310 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00310 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00310 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00310 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00310 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00310 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00310 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00310 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00310 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.