| Name | long intergenic non-protein coding RNA 310 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Deregulation of the long non‐coding RNA LINC00310 has emerged from multiple studies as a potential oncogenic driver and prognostic biomarker in diverse clinical settings. In breast cancer, LINC00310 expression increases with disease progression and poor patient survival, and functional experiments using CRISPR/Cas9 knockout and rescue approaches have demonstrated that LINC00310 promotes cell proliferation and in vivo tumor growth by up‐regulating the c-Myc pathway."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, LINC00310 is part of a gene signature associated with recurrence in breast invasive carcinoma"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "as well as being linked with recurrence in papillary thyroid cancer."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Similar oncogenic functions appear in other tumor types; for example, during the malignant transformation of human bronchial epithelial cells exposed to glycidyl methacrylate, LINC00310 is up‐regulated in later stages along with its target gene C-Myc."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Furthermore, in buccal mucosa squamous cell carcinoma, LINC00310 exhibits marked expression alterations and is associated with poorer clinical outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Beyond its role in cancer, genome‐wide association analyses have identified LINC00310 as a candidate gene expressed in arterial tissues and linked to the risk of spontaneous coronary artery dissection"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while integrative ceRNA network studies in Duchenne muscular dystrophy have uncovered LINC00310 as a hub potentially contributing to the increased tumorigenesis observed in this condition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings suggest that LINC00310 functions as an oncogenic lncRNA by modulating key regulatory pathways—most notably via c-Myc—and that its aberrant expression is closely associated with tumor recurrence, progression, and adverse clinical outcomes. Accordingly, LINC00310 holds promise not only as a prognostic marker in various cancers but also as a potential target for therapeutic intervention.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Juan Li, Wanxin Peng, Lutao Du, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The oncogenic potentials and diagnostic significance of long non-coding RNA LINC00310 in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.13750"}], "href": "https://doi.org/10.1111/jcmm.13750"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29993199"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29993199"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hairong Liu, Juan Li, Pratirodh Koirala, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNAs as prognostic markers in human breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.7828"}], "href": "https://doi.org/10.18632/oncotarget.7828"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26942882"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26942882"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Ben Ma, Tian Liao, Duo Wen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-coding RNA 271 is predictive of a poorer prognosis of papillary thyroid cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep36973"}], "href": "https://doi.org/10.1038/srep36973"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27833134"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27833134"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Shunpeng Ma, Quankai Wang, Guangyun Xie, et al. "}, {"type": "b", "children": [{"type": "t", "text": "[Role of LINC00310 in the glycidyl methacrylate-induced malignant transformation of human bronchial epithelial cell]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Wei Sheng Yan Jiu (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.19813/j.cnki.weishengyanjiu.2020.05.003"}], "href": "https://doi.org/10.19813/j.cnki.weishengyanjiu.2020.05.003"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33070810"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33070810"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Kinjal D Patel, Hemangini H Vora, Trupti I Trivedi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcriptome profiling and pathway analysis in squamous cell carcinoma of buccal mucosa."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Mol Pathol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.yexmp.2020.104378"}], "href": "https://doi.org/10.1016/j.yexmp.2020.104378"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31930966"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31930966"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Tamiel N Turley, Megan M O'Byrne, Matthew L Kosel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA Cardiol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jamacardio.2020.0872"}], "href": "https://doi.org/10.1001/jamacardio.2020.0872"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32374345"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32374345"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xiaoxue Xu, Yuehan Hao, Shuang Xiong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of Long Non-coding RNA-Associated Competing Endogenous RNA Network in Duchenne Muscular Dystrophy."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Interdiscip Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12539-020-00388-2"}], "href": "https://doi.org/10.1007/s12539-020-00388-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32876881"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32876881"}]}]}]}
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| Synonyms | NCRNA00310, C21ORF82 |
| Proteins | CU082_HUMAN |
| NCBI Gene ID | 114036 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00310 has 1,437 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 26 datasets.
Click the + buttons to view associations for LINC00310 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00310 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00310 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00310 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00310 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00310 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00310 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00310 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00310 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00310 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GAD High Level Gene-Disease Associations | diseases associated with LINC00310 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00310 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00310 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00310 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00310 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00310 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00310 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00310 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00310 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00310 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00310 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |