| Name | long intergenic non-protein coding RNA 313 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00313 is an emerging long non‐coding RNA with oncogenic functions that has been reported to be aberrantly up‐regulated in a variety of human malignancies and pathologic conditions. In glioblastoma, papillary thyroid cancer, osteosarcoma, non‐small cell lung cancer, cervical cancer, and early‐stage lung cancer, overexpression of LINC00313 promotes tumor progression by enhancing cell proliferation, migration, invasion, epithelial–mesenchymal transition, and by inhibiting apoptosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "6"}]}, {"type": "t", "text": " In several studies, mechanistic investigations revealed that LINC00313 exerts its oncogenic role by acting as a competing endogenous RNA, “sponging” tumor‐suppressive microRNAs – for instance, miR‑342‑3p, miR‑485‑5p, miR‑4429, miR‑422a, and miR‑4677‑3p – thereby relieving repression on downstream targets such as Zic4, FOSL2, CDK6, or by regulating epigenetic modifiers (for example, recruiting DNMT1 and DNMT3B to enhance promoter methylation of target genes such as ALX4) to activate oncogenic signaling pathways including AKT/mTOR."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}, {"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its role in classical tumorigenesis, LINC00313 has been implicated in viral‐related pathologies. During Kaposi’s sarcoma‐associated herpesvirus reactivation, LINC00313 is up‐regulated and interacts with the HIV‑1 secreted Tat protein, which disrupts its association with epigenetic regulatory complexes (such as PRC2) and, in turn, modulates endothelial cell motility and angiogenic pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, beyond its implication in cancer, LINC00313 has been identified as a hub long non‐coding RNA in osteoarthritis, where it may regulate extracellular matrix organization and chondrocyte homeostasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": " Collectively, the accumulated evidence suggests that LINC00313 acts as a multifunctional regulator in disease, serving not only as a potential diagnostic and prognostic biomarker but also as a promising therapeutic target in various oncologic and non‐oncologic conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}, {"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lianqi Shao, Qianru He, Yunhui Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "UPF1 regulates the malignant biological behaviors of glioblastoma cells via enhancing the stability of Linc-00313."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-019-1845-1"}], "href": "https://doi.org/10.1038/s41419-019-1845-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31427569"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31427569"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "W J Wu, H Yin, J J Hu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00313 modulates papillary thyroid cancer tumorigenesis via sponging miR-4429."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neoplasma (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4149/neo_2018_180219N125"}], "href": "https://doi.org/10.4149/neo_2018_180219N125"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29940766"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29940766"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "D-G Yan, N Liu, M Chao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SP1-induced upregulation of long noncoding RNA LINC00313 contributes to papillary thyroid cancer progression via the miR-422a."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201902_17004"}], "href": "https://doi.org/10.26355/eurrev_201902_17004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30779082"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30779082"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hongtao Chen, Paerhati Wahafu, Leilei Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00313 Knockdown Inhibits Tumorigenesis and Metastasis in Human Osteosarcoma by Upregulating FOSL2 through Sponging miR-342-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Yonsei Med J (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3349/ymj.2020.61.5.359"}], "href": "https://doi.org/10.3349/ymj.2020.61.5.359"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32390359"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32390359"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jinxiang Wang, Lihua Zhang, Caihong Wang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Differentially expressed protein-coding genes and long noncoding RNA in early-stage lung cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Tumour Biol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13277-015-3714-6"}], "href": "https://doi.org/10.1007/s13277-015-3714-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26178480"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26178480"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xingzhi Zhao, Xinhua Hu "}, {"type": "b", "children": [{"type": "t", "text": "Downregulated long noncoding RNA LINC00313 inhibits the epithelial-mesenchymal transition, invasion, and migration of thyroid cancer cells through inhibiting the methylation of ALX4."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28703"}], "href": "https://doi.org/10.1002/jcp.28703"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31093972"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31093972"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yongning Zhai, Yang Liu, Zhen Wang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "ceRNA network construction and comparison of gastric cancer with or without Helicobacter pylori infection."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.27467"}], "href": "https://doi.org/10.1002/jcp.27467"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30370523"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30370523"}]}]}]}
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| Synonyms | CH507-42P11.5, C21ORF84, NCRNA00313 |
| Proteins | CU084_HUMAN |
| NCBI Gene ID | 114038 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00313 has 1,428 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.
Click the + buttons to view associations for LINC00313 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00313 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00313 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00313 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00313 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00313 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00313 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00313 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| CTD Gene-Chemical Interactions | chemicals interacting with LINC00313 gene/protein from the curated CTD Gene-Chemical Interactions dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00313 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00313 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00313 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00313 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00313 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00313 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00313 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00313 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00313 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00313 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| LOCATE Predicted Protein Localization Annotations | cellular components predicted to contain LINC00313 protein from the LOCATE Predicted Protein Localization Annotations dataset. | |
| MiRTarBase microRNA Targets | microRNAs targeting LINC00313 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00313 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00313 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00313 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |