| Name | long intergenic non-protein coding RNA 320 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long non‐coding RNA LINC00320 has emerged as an important regulatory molecule in the central nervous system with diverse roles in both cancer biology and normal brain function. In glioma, LINC00320 is notably down‐regulated in malignant tissues, and its reduced expression correlates with poor patient prognosis. Mechanistic studies have shown that nuclear LINC00320 exerts tumor‐suppressive effects by binding to β‑catenin and thereby disrupting the formation of the β‑catenin/TCF4 complex. This interference with the Wnt/β‑catenin signaling pathway ultimately hampers glioma cell proliferation; intriguingly, this process is regulated by HMGB1, forming a novel HMGB1/LINC00320/β‑catenin axis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its role in malignant progression, LINC00320 has been identified as one of several immune‐related long non‐coding RNAs with prognostic value in low‐grade glioma, suggesting that it may also modulate the immune microenvironment of these tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Beyond oncogenesis, expression profiling in human brain tissues has revealed that the full‐length transcript of LINC00320 is exclusively expressed in brain white matter and appears to be absent in non‐human primates. This unique expression pattern implies a potential role in enhancing functional connectivity and higher cognitive processes in humans."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, coexpression analyses in breast cancer have associated LINC00320 with gene networks involved in transcriptional regulation and glycosphingolipid biosynthesis pathways, indicating that its functional repertoire may extend to other regulatory processes beyond the nervous system."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Collectively, these studies highlight LINC00320 as a multifaceted long non‐coding RNA whose dysregulation contributes to glioma progression, while its brain‐specific expression points to additional roles in human neural function. Further research will be essential to fully elucidate its molecular mechanisms across different tissue contexts.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Shuaiwei Tian, Wei Liu, Yixin Pan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA Linc00320 inhibits glioma cell proliferation through restraining Wnt/β-catenin signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.11.101"}], "href": "https://doi.org/10.1016/j.bbrc.2018.11.101"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30503496"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30503496"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Aierpati Maimaiti, Lei Jiang, Xixian Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and validation of an individualized prognostic signature of lower-grade glioma based on nine immune related long non-coding RNA."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Neurol Neurosurg (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clineuro.2020.106464"}], "href": "https://doi.org/10.1016/j.clineuro.2020.106464"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33454543"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33454543"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "James D Mills, Jieqiong Chen, Woojin S Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intervening non-coding RNA 00320 is human brain-specific and highly expressed in the cortical white matter."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neurogenetics (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s10048-015-0445-1"}], "href": "https://doi.org/10.1007/s10048-015-0445-1"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25819921"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25819921"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ying Dong, Ting Zhang, Xining Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of coexpressed long noncoding RNAs and genes in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Obstet Gynaecol Res (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jog.13840"}], "href": "https://doi.org/10.1111/jog.13840"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30362198"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30362198"}]}]}]}
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| Synonyms | C21ORF131, PRED14, NCRNA00320 |
| NCBI Gene ID | 387486 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00320 has 518 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 24 datasets.
Click the + buttons to view associations for LINC00320 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00320 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00320 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00320 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00320 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00320 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00320 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00320 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00320 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00320 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00320 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00320 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GWASdb SNP-Disease Associations | diseases associated with LINC00320 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset. | |
| GWASdb SNP-Phenotype Associations | phenotypes associated with LINC00320 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00320 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00320 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00320 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles | cell types and tissues with high or low DNA methylation of LINC00320 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00320 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00320 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |