LINC00323 Gene

Name long intergenic non-protein coding RNA 323
Summary
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In diabetic nephropathy, it has been shown to drive the polarization of M1 macrophages via the PI3K/AKT signaling pathway, thereby promoting renal inflammation and injury."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In the vascular system, LINC00323 is strongly induced under hypoxic conditions in endothelial cells, where it is essential for maintaining proper cell-cycle progression and capillary formation, indicating an important role in angiogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, its genomic localization within a Down syndrome candidate region for congenital heart defects suggests that LINC00323 may also influence cardiac development"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while emerging genetic studies have implicated LINC00323 as a candidate gene in essential tremor."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings indicate that LINC00323 participates in diverse biological processes—ranging from cancer recurrence and inflammation to angiogenic regulation and cardiac development—underscoring its potential as both a prognostic biomarker and a therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Hairong Liu, Juan Li, Pratirodh Koirala, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Screening of Significant Biomarkers Related to Prognosis of Cervical Cancer and Functional Study Based on lncRNA-associated ceRNA Regulatory Network."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Comb Chem High Throughput Screen (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2174/1386207323999200729113028"}], "href": "https://doi.org/10.2174/1386207323999200729113028"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32729415"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32729415"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Shanyong Zhang, Lei Ding, Xin Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of biomarkers associated with the recurrence of osteosarcoma using ceRNA regulatory network analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ijmm.2019.4108"}], "href": "https://doi.org/10.3892/ijmm.2019.4108"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30816442"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30816442"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Kun Li, Qiang Li "}, {"type": "b", "children": [{"type": "t", "text": "LINC00323 mediates the role of M1 macrophage polarization in diabetic nephropathy through PI3K/AKT signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Immunol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.humimm.2021.08.010"}], "href": "https://doi.org/10.1016/j.humimm.2021.08.010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34538530"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34538530"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jan Fiedler, Kaja Breckwoldt, Christian W Remmele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Development of Long Noncoding RNA-Based Strategies to Modulate Tissue Vascularization."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Am Coll Cardiol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.jacc.2015.07.081"}], "href": "https://doi.org/10.1016/j.jacc.2015.07.081"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26516004"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26516004"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Maria Chiara Pelleri, Elena Gennari, Chiara Locatelli, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genotype-phenotype correlation for congenital heart disease in Down syndrome through analysis of partial trisomy 21 cases."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2017.06.004"}], "href": "https://doi.org/10.1016/j.ygeno.2017.06.004"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28648597"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28648597"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Calwing Liao, Charles-Etienne Castonguay, Karl Heilbron, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Association of Essential Tremor With Novel Risk Loci: A Genome-Wide Association Study and Meta-analysis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "JAMA Neurol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1001/jamaneurol.2021.4781"}], "href": "https://doi.org/10.1001/jamaneurol.2021.4781"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34982113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34982113"}]}]}]}
Synonyms C21ORF130, NCRNA00323, PRED42
NCBI Gene ID 284835
API
Download Associations
Predicted Functions View LINC00323's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00323's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00323's ARCHS4 Predicted Functions.

Functional Associations

LINC00323 has 922 functional associations with biological entities spanning 6 categories (molecular profile, functional term, phrase or reference, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for LINC00323 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00323 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00323 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00323 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00323 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00323 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00323 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00323 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00323 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00323 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GeneSigDB Published Gene Signatures PubMedIDs of publications reporting gene signatures containing LINC00323 from the GeneSigDB Published Gene Signatures dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00323 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00323 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00323 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00323 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00323 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00323 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00323 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00323 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00323 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00323 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00323 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00323 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00323 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.