LINC00334 Gene

Name long intergenic non-protein coding RNA 334
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nThe collection of studies provided offers an extensive view into the critical roles of neuron‐specific RNA binding proteins—particularly the NOVA family—in regulating alternative splicing, neuronal migration, axon guidance, synaptic development, and even aspects of vascular lumen formation."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": " These works employ techniques such as HITS-CLIP, CLIP, and integrative network analyses to map RNA-protein interactions in vivo, delineating how the precise positioning of binding motifs (such as YCAY clusters) dictates splicing outcomes and influences neural function."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nAdditional reports extend these findings by demonstrating that NOVA proteins not only impact traditional aspects of neuronal differentiation and synaptic assembly, but also exert influence in non-neuronal settings such as adipose tissue thermogenesis and angiogenesis, thereby highlighting the expansive role of splicing regulation in diverse biological processes."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "7", "end_ref": "11"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nLastly, another study identifies NOVA2 as a key global regulator of circular RNA biogenesis in the developing brain, further underscoring the multifaceted impacts of alternative splicing and RNA metabolism on neural development."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nNotably, however, none of the abstracts reference or shed light on the function of LINC00334. While these reports collectively illustrate how post‐transcriptional RNA regulation (chiefly via NOVA proteins) orchestrates crucial neural and metabolic processes, they do not contain any data or discussion regarding LINC00334. As such, based on this collection, the functional role of LINC00334 remains undefined and would require further investigation to determine whether it contributes to similar splicing regulatory networks, represents a distinct regulatory element in other cell contexts, or fulfills an entirely different role.\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jernej Ule, Kirk B Jensen, Matteo Ruggiu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "CLIP identifies Nova-regulated RNA networks in the brain."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1090095"}], "href": "https://doi.org/10.1126/science.1090095"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "14615540"}], "href": "https://pubmed.ncbi.nlm.nih.gov/14615540"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jernej Ule, Giovanni Stefani, Aldo Mele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An RNA map predicting Nova-dependent splicing regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature05304"}], "href": "https://doi.org/10.1038/nature05304"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17065982"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17065982"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Donny D Licatalosi, Aldo Mele, John J Fak, et al. "}, {"type": "b", "children": [{"type": "t", "text": "HITS-CLIP yields genome-wide insights into brain alternative RNA processing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nature (2008)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/nature07488"}], "href": "https://doi.org/10.1038/nature07488"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18978773"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18978773"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Matteo Ruggiu, Ruth Herbst, Natalie Kim, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Rescuing Z+ agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.0813112106"}], "href": "https://doi.org/10.1073/pnas.0813112106"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19221030"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19221030"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Chaolin Zhang, Maria A Frias, Aldo Mele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Science (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1126/science.1191150"}], "href": "https://doi.org/10.1126/science.1191150"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20558669"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20558669"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Masato Yano, Yoshika Hayakawa-Yano, Aldo Mele, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Nova2 regulates neuronal migration through an RNA switch in disabled-1 signaling."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2010.05.007"}], "href": "https://doi.org/10.1016/j.neuron.2010.05.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20620871"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20620871"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Costanza Giampietro, Gianluca Deflorian, Stefania Gallo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The alternative splicing factor Nova2 regulates vascular development and lumen formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nat Commun (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/ncomms9479"}], "href": "https://doi.org/10.1038/ncomms9479"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26446569"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26446569"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yuhki Saito, Soledad Miranda-Rottmann, Matteo Ruggiu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOVA2-mediated RNA regulation is required for axonal pathfinding during development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.14371"}], "href": "https://doi.org/10.7554/eLife.14371"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27223325"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27223325"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Janelle C Leggere, Yuhki Saito, Robert B Darnell, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOVA regulates Dcc alternative splicing during neuronal migration and axon guidance in the spinal cord."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.14264"}], "href": "https://doi.org/10.7554/eLife.14264"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27223328"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27223328"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Santiago Vernia, Yvonne Jk Edwards, Myoung Sook Han, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An alternative splicing program promotes adipose tissue thermogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Elife (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7554/eLife.17672"}], "href": "https://doi.org/10.7554/eLife.17672"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27635635"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27635635"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Yuhki Saito, Yuan Yuan, Ilana Zucker-Scharff, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Differential NOVA2-Mediated Splicing in Excitatory and Inhibitory Neurons Regulates Cortical Development and Cerebellar Function."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Neuron (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.neuron.2018.12.019"}], "href": "https://doi.org/10.1016/j.neuron.2018.12.019"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30638744"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30638744"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "David Knupp, Daphne A Cooper, Yuhki Saito, et al. "}, {"type": "b", "children": [{"type": "t", "text": "NOVA2 regulates neural circRNA biogenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Nucleic Acids Res (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/nar/gkab523"}], "href": "https://doi.org/10.1093/nar/gkab523"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34157123"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34157123"}]}]}]}
Synonyms NCRNA00334, C21ORF89
NCBI Gene ID 114042
API
Download Associations
Predicted Functions View LINC00334's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00334's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00334's ARCHS4 Predicted Functions.

Functional Associations

LINC00334 has 438 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00334 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00334 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00334 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00334 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00334 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00334 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00334 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00334 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00334 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00334 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MiRTarBase microRNA Targets microRNAs targeting LINC00334 gene in low- or high-throughput microRNA targeting studies from the MiRTarBase microRNA Targets dataset.