| Name | long intergenic non-protein coding RNA 339 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00339 is a multifunctional long noncoding RNA that plays diverse regulatory roles in both cancer‐related and nonmalignant diseases. In musculoskeletal disorders, for example, genetic variants within regulatory regions at 1p36.12 form long‐range chromatin loops that increase LINC00339 expression, thereby modulating downstream targets such as CDC42 and contributing to osteoporosis pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In several cancers, LINC00339 functions as an oncogenic competing endogenous RNA: it sponges tumor suppressor microRNAs—including miR‑377‑3p in triple‐negative breast cancer and gastric cancer, miR‑145 in non‐small cell lung and laryngeal carcinomas, miR‑497‑5p in pancreatic cancer, miR‑152 in hepatocellular carcinoma, and miR‑539‑5p in glioma—leading to the derepression of oncogenic effectors such as HOXC6, FOXM1, IGF1R, DCP1A, ROCK1, and TWIST1 that drive cell proliferation, migration, invasion, and resistance to apoptosis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "7"}]}, {"type": "t", "text": " Moreover, LINC00339 has been implicated in glioma, where its suppression by therapeutic agents correlates with reduced tumor growth, and in endometrial disorders, where altered expression within lesion foci impacts immune‐related gene networks."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Additional studies have highlighted its role in other pathological settings, such as in gastric cancer via regulation of DCP1A (which reinforces its pro‑tumorigenic function), in renal epithelial cell pyroptosis through modulation of the NLRP3 inflammasome via miR‑22‑3p, and in doxorubicin‑induced cardiotoxicity by targeting miR‑484."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "13"}]}, {"type": "t", "text": " Finally, the inclusion of LINC00339 in prognostic signatures further supports its clinical potential as a diagnostic and therapeutic target across multiple human cancers"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "and underscores its contribution to disease mechanisms such as abnormal bone turnover in osteoporosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "15"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xiao-Feng Chen, Dong-Li Zhu, Man Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An Osteoporosis Risk SNP at 1p36.12 Acts as an Allele-Specific Enhancer to Modulate LINC00339 Expression via Long-Range Loop Formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Hum Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajhg.2018.03.001"}], "href": "https://doi.org/10.1016/j.ajhg.2018.03.001"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29706346"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29706346"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Joseph E Powell, Jenny N Fung, Konstantin Shakhbazov, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Endometriosis risk alleles at 1p36.12 act through inverse regulation of CDC42 and LINC00339."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Mol Genet (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/hmg/ddw320"}], "href": "https://doi.org/10.1093/hmg/ddw320"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28171565"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28171565"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiaolong Wang, Tong Chen, Yan Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA Linc00339 promotes triple-negative breast cancer progression through miR-377-3p/HOXC6 signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28007"}], "href": "https://doi.org/10.1002/jcp.28007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30618083"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30618083"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yuan Yuan, Gao Haiying, Li Zhuo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00339 facilitates the tumorigenesis of non-small cell lung cancer by sponging miR-145 through targeting FOXM1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2018.06.022"}], "href": "https://doi.org/10.1016/j.biopha.2018.06.022"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29906749"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29906749"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Renchun Zhang, Shuqing Hao, Lei Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00339 promotes cell proliferation and metastasis in pancreatic cancer via miR-497-5p/IGF1R axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J BUON (2019)"}]}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31128030"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31128030"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Kun Chen, Liang Zhang "}, {"type": "b", "children": [{"type": "t", "text": "LINC00339 regulates ROCK1 by miR-152 to promote cell proliferation and migration in hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28701"}], "href": "https://doi.org/10.1002/jcb.28701"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31081143"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31081143"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Junqing Guo, Heng Cai, Xiaobai Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-coding RNA LINC00339 Stimulates Glioma Vasculogenic Mimicry Formation by Regulating the miR-539-5p/TWIST1/MMPs Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Ther Nucleic Acids (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.omtn.2017.11.011"}], "href": "https://doi.org/10.1016/j.omtn.2017.11.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29499931"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29499931"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yidan Luo, Liang Liu, Xiaojian Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Avasimibe inhibits the proliferation, migration and invasion of glioma cells by suppressing linc00339."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2020.110508"}], "href": "https://doi.org/10.1016/j.biopha.2020.110508"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32682982"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32682982"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Sarah J Holdsworth-Carson, Molly Churchill, Jacqueline F Donoghue, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Elucidating the role of long intergenic non-coding RNA 339 in human endometrium and endometriosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Hum Reprod (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/molehr/gaab010"}], "href": "https://doi.org/10.1093/molehr/gaab010"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33576410"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33576410"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Chengmin Shi, Tonglei Liu, Junlin Chi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00339 promotes gastric cancer progression by elevating DCP1A expression via inhibiting miR-377-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28934"}], "href": "https://doi.org/10.1002/jcp.28934"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31188482"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31188482"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Zhengyao Song, Yangyang Zhang, Binbin Gong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00339 promotes renal tubular epithelial pyroptosis by regulating the miR-22-3p/NLRP3 axis in calcium oxalate-induced kidney stone."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28330"}], "href": "https://doi.org/10.1002/jcb.28330"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30614043"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30614043"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Shouzhou Liu, Wenchao Duan "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00339 promotes laryngeal squamous cell carcinoma cell proliferation and invasion via sponging miR-145."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.28110"}], "href": "https://doi.org/10.1002/jcb.28110"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30485513"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30485513"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Jing Li, Li Li, Xun Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00339 aggravates doxorubicin-induced cardiomyocyte apoptosis by targeting MiR-484."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2018.08.090"}], "href": "https://doi.org/10.1016/j.bbrc.2018.08.090"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30170730"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30170730"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Guoqing Bao, Ran Xu, Xiuying Wang, et al. 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| Synonyms | NCRNA00339, HSPC157 |
| NCBI Gene ID | 29092 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00339 has 3,434 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 32 datasets.
Click the + buttons to view associations for LINC00339 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00339 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray | tissue samples with high or low expression of LINC00339 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset. | |
| Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq | tissue samples with high or low expression of LINC00339 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset. | |
| Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles | tissues with high or low expression of LINC00339 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset. | |
| BioGPS Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00339 gene relative to other cell lines from the BioGPS Cell Line Gene Expression Profiles dataset. | |
| BioGPS Human Cell Type and Tissue Gene Expression Profiles | cell types and tissues with high or low expression of LINC00339 gene relative to other cell types and tissues from the BioGPS Human Cell Type and Tissue Gene Expression Profiles dataset. | |
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00339 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00339 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| ChEA Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00339 gene from the CHEA Transcription Factor Binding Site Profiles dataset. | |
| ChEA Transcription Factor Targets | transcription factors binding the promoter of LINC00339 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset. | |
| CMAP Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00339 gene from the CMAP Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00339 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| ENCODE Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00339 gene from the ENCODE Histone Modification Site Profiles dataset. | |
| ENCODE Transcription Factor Binding Site Profiles | transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00339 gene from the ENCODE Transcription Factor Binding Site Profiles dataset. | |
| ENCODE Transcription Factor Targets | transcription factors binding the promoter of LINC00339 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset. | |
| GDSC Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00339 gene relative to other cell lines from the GDSC Cell Line Gene Expression Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00339 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00339 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations | transcription factor perturbations changing expression of LINC00339 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00339 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00339 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00339 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| GTEx Tissue-Specific Aging Signatures | tissue samples with high or low expression of LINC00339 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset. | |
| JASPAR Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00339 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00339 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00339 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset. | |
| LINCS L1000 CMAP Chemical Perturbation Consensus Signatures | small molecule perturbations changing expression of LINC00339 gene from the LINCS L1000 CMAP Chemical Perturbations Consensus Signatures dataset. | |
| LINCS L1000 CMAP CRISPR Knockout Consensus Signatures | gene perturbations changing expression of LINC00339 gene from the LINCS L1000 CMAP CRISPR Knockout Consensus Signatures dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00339 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |
| MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations | gene perturbations changing expression of LINC00339 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset. | |
| Roadmap Epigenomics Histone Modification Site Profiles | histone modification site profiles with high histone modification abundance at LINC00339 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset. | |
| TCGA Signatures of Differentially Expressed Genes for Tumors | tissue samples with high or low expression of LINC00339 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset. | |