| Name | long intergenic non-protein coding RNA 348 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00348 is a long non‐coding RNA that has emerged as a candidate regulator in cancer. In cutaneous squamous cell carcinoma (cSCC), LINC00348 is co‐expressed with mRNAs such as ACY3, NR1D1, and MZB1, suggesting that it may play a role in modulating endoplasmic reticulum stress–induced apoptosis, autophagy, and ultimately cSCC progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In addition, while a separate genome‐wide methylation profiling study in an Asian cohort of chronic lymphocytic leukemia (CLL) identified extensive differential methylation across various gene types—including numerous long non‐coding RNAs—the specific function of LINC00348 in this context remains to be fully elucidated. Nonetheless, its presence among epigenetically regulated non‐coding sequences underscores the broader significance of lncRNAs in tumorigenesis and cellular signaling pathways."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yu Hu, Rong Li, Hongyin Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of lncRNA-mRNAs co-expression network identifies potential lncRNA biomarkers in cutaneous squamous cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Genomics (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12864-022-08481-0"}], "href": "https://doi.org/10.1186/s12864-022-08481-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35392800"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35392800"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Miyoung Kim, Eunyup Lee, Dae Young Zang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Novel genes exhibiting DNA methylation alterations in Korean patients with chronic lymphocytic leukaemia: a methyl-CpG-binding domain sequencing study."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41598-020-57919-6"}], "href": "https://doi.org/10.1038/s41598-020-57919-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31974418"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31974418"}]}]}]}
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| NCBI Gene ID | 100885781 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00348 has 155 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 4 datasets.
Click the + buttons to view associations for LINC00348 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00348 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00348 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00348 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00348 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |