LINC00349 Gene

Name long intergenic non-protein coding RNA 349
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nPSTPIP2 is an adaptor protein that plays a central role in preventing autoinflammatory bone disorders. Studies in mouse models have shown that loss‐of‐function mutations in PSTPIP2 result in uncontrolled inflammatory responses manifesting as chronic multifocal osteomyelitis and related syndromes. Deficiency of this protein leads to abnormal activation and expansion of macrophage precursors as well as enhanced IL‐1β production by neutrophils, altogether promoting inflammation and bone lesions. Moreover, in syndromes with sterile inflammation such as SAPHO, an impaired regulatory function of PSTPIP2 contributes to the persistence of inflammatory stimuli."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "5"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn myeloid cells, PSTPIP2 exerts its inhibitory influence on key signaling pathways that regulate osteoclast differentiation and cytokine production. By modulating CSF-1 receptor signaling and interacting with molecules such as PEST-family phosphatases and SHIP1, PSTPIP2 suppresses the fusion and differentiation of osteoclast precursors and dampens excessive production of proinflammatory mediators like IL-1β and MIP-1α. Furthermore, defects in PSTPIP2 function lead to dysregulated actin dynamics––notably at podosomes––which correlate with enhanced cell motility, exaggerated matrix degradation, and ultimately contribute to pathological bone resorption."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "6", "end_ref": "12"}]}, {"type": "t", "text": "\n"}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nBeyond its role in bone homeostasis, PSTPIP2 influences broader inflammatory and fibrotic processes. Aberrant expression or epigenetic silencing of PSTPIP2 has been implicated in the misregulation of macrophage polarization––with shifts in the balance between M1 and M2 phenotypes––thereby exacerbating tissue inflammation and fibrosis, as seen in hepatic fibrosis models. Moreover, by negatively regulating NADPH oxidase activity, PSTPIP2 helps to limit reactive oxygen species production, underscoring its importance in restraining inflammatory tissue damage. Collectively, these findings position PSTPIP2 as a key negative regulator of both innate immune activation and osteoclast-mediated bone resorption."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "13", "end_ref": "18"}]}, {"type": "t", "text": "\n"}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Violeta Chitu, Fiona J Pixley, Frank Macaluso, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The PCH family member MAYP/PSTPIP2 directly regulates F-actin bundling and enhances filopodia formation and motility in macrophages."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biol Cell (2005)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1091/mbc.e04-10-0914"}], "href": "https://doi.org/10.1091/mbc.e04-10-0914"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15788569"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15788569"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Polly J Ferguson, Xinyu Bing, Mohammed A Vasef, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A missense mutation in pstpip2 is associated with the murine autoinflammatory disorder chronic multifocal osteomyelitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Bone (2006)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bone.2005.07.009"}], "href": "https://doi.org/10.1016/j.bone.2005.07.009"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "16122996"}], "href": "https://pubmed.ncbi.nlm.nih.gov/16122996"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Marcello Govoni, Matteo Colina, Alfonso Massara, et al. "}, {"type": "b", "children": [{"type": "t", "text": "\"SAPHO syndrome and infections\"."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Autoimmun Rev (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.autrev.2008.07.030"}], "href": "https://doi.org/10.1016/j.autrev.2008.07.030"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "18721907"}], "href": "https://pubmed.ncbi.nlm.nih.gov/18721907"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Violeta Chitu, Polly J Ferguson, Rosalie de Bruijn, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Primed innate immunity leads to autoinflammatory disease in PSTPIP2-deficient cmo mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2009)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2009-02-204925"}], "href": "https://doi.org/10.1182/blood-2009-02-204925"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "19608749"}], "href": "https://pubmed.ncbi.nlm.nih.gov/19608749"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Tsung-Chieh Chen, José Jiun-Shian Wu, Wei-Pang Chang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Spontaneous inflammatory pain model from a mouse line with N-ethyl-N-nitrosourea mutagenesis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biomed Sci (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/1423-0127-19-55"}], "href": "https://doi.org/10.1186/1423-0127-19-55"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22646813"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22646813"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Violeta Chitu, Viorel Nacu, Julia F Charles, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PSTPIP2 deficiency in mice causes osteopenia and increased differentiation of multipotent myeloid precursors into osteoclasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Blood (2012)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1182/blood-2012-04-425595"}], "href": "https://doi.org/10.1182/blood-2012-04-425595"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "22923495"}], "href": "https://pubmed.ncbi.nlm.nih.gov/22923495"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Kazuya Tsujita, Akihiro Kondo, Shusaku Kurisu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Antagonistic regulation of F-BAR protein assemblies controls actin polymerization during podosome formation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Sci (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1242/jcs.122515"}], "href": "https://doi.org/10.1242/jcs.122515"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23525018"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23525018"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "John R Lukens, Jordan M Gross, Christopher Calabrese, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Critical role for inflammasome-independent IL-1β production in osteomyelitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1318688111"}], "href": "https://doi.org/10.1073/pnas.1318688111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24395792"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24395792"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Suzanne L Cassel, John R Janczy, Xinyu Bing, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Inflammasome-independent IL-1β mediates autoinflammatory disease in Pstpip2-deficient mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Proc Natl Acad Sci U S A (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1073/pnas.1318685111"}], "href": "https://doi.org/10.1073/pnas.1318685111"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24395802"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24395802"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Hsiu-Jung Liao, I-Tsu Chyuan, Chien-Sheng Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Increased neutrophil infiltration, IL-1 production and a SAPHO syndrome-like phenotype in PSTPIP2-deficient mice."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Rheumatology (Oxford) (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/rheumatology/keu481"}], "href": "https://doi.org/10.1093/rheumatology/keu481"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "25602062"}], "href": "https://pubmed.ncbi.nlm.nih.gov/25602062"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Ales Drobek, Jarmila Kralova, Tereza Skopcova, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PSTPIP2, a Protein Associated with Autoinflammatory Disease, Interacts with Inhibitory Enzymes SHIP1 and Csk."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2015)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1401494"}], "href": "https://doi.org/10.4049/jimmunol.1401494"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "26304991"}], "href": "https://pubmed.ncbi.nlm.nih.gov/26304991"}]}, {"type": "r", "ref": 12, "children": [{"type": "t", "text": "Martin Sztacho, Sandra Segeletz, Maria Arantzazu Sanchez-Fernandez, et al. "}, {"type": "b", "children": [{"type": "t", "text": "BAR Proteins PSTPIP1/2 Regulate Podosome Dynamics and the Resorption Activity of Osteoclasts."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0164829"}], "href": "https://doi.org/10.1371/journal.pone.0164829"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27760174"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27760174"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Yang Yang, Xiao-Qin Wu, Wan-Xia Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "PSTPIP2 connects DNA methylation to macrophage polarization in CCL4-induced mouse model of hepatic fibrosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncogene (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41388-018-0383-0"}], "href": "https://doi.org/10.1038/s41388-018-0383-0"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29993036"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29993036"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Jarmila Kralova, Ales Drobek, Jan Prochazka, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Dysregulated NADPH Oxidase Promotes Bone Damage in Murine Model of Autoinflammatory Osteomyelitis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Immunol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.4049/jimmunol.1900953"}], "href": "https://doi.org/10.4049/jimmunol.1900953"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32024700"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32024700"}]}, {"type": "r", "ref": 15, "children": [{"type": "t", "text": "Yao Yao, Xiaoyu Cai, Meng Zhang, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Histone deacetylase-mediated silencing of PSTPIP2 expression contributes to aristolochic acid nephropathy-induced PANoptosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Br J Pharmacol (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/bph.16299"}], "href": "https://doi.org/10.1111/bph.16299"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38073114"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38073114"}]}]}]}
NCBI Gene ID 100874135
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Predicted Functions View LINC00349's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00349's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00349's ARCHS4 Predicted Functions.

Functional Associations

LINC00349 has 2 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for LINC00349 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00349 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.