| Name | long intergenic non-protein coding RNA 358 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\nIn the nervous system, link protein—often referred to as Crtl1 or HAPLN1—serves as an essential organizer of the extracellular matrix by promoting the formation and consolidation of perineuronal nets. These specialized matrix structures are critical for limiting synaptic plasticity during maturation, regulating fear memory persistence, and affording neuroprotection. Alterations in link protein expression or its proper assembly can, for instance, render neural circuits more plastic or, conversely, more resistant to pathological degeneration."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "4"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nDuring development, link protein plays a pivotal role in stabilizing the interaction between hyaluronan and chondroitin sulphate proteoglycans such as versican. This stabilization is crucial for proper morphogenesis in multiple organs. In the developing heart, for example, its regulated expression—controlled by transcription factors including Sox9, Mef2c, and homeodomain proteins—is required for endocardial cushion formation and septation, while in cartilage it is indispensable for normal skeletal growth. Additionally, cooperative interactions with other matrix proteins like neurocan underscore its wider function in establishing organized extracellular matrices in diverse tissues."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "5", "end_ref": "9"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n\n"}, {"type": "p", "children": [{"type": "t", "text": "\nIn pathological and reparative contexts the modulation of link protein expression significantly influences disease progression and tissue repair. In cancer, for instance, elevated levels of HAPLN1 within the extracellular matrix can enhance tumor cell plasticity and modify vascular permeability—factors that may redirect routes of metastasis, as observed in melanoma and pancreatic ductal adenocarcinoma. Similarly, in bone and cartilage, increased link protein supports osteogenic differentiation and fracture healing via the BMP4/Smad pathway, and its interactions with other matrix constituents contribute to bone remodeling and metabolic balance. These findings collectively highlight link protein’s multifaceted role as a structural and regulatory element across both normal physiology and disease states."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "10", "end_ref": "14"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Daniela Carulli, Tommaso Pizzorusso, Jessica C F Kwok, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Animals lacking link protein have attenuated perineuronal nets and persistent plasticity."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Brain (2010)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1093/brain/awq145"}], "href": "https://doi.org/10.1093/brain/awq145"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "20566484"}], "href": "https://pubmed.ncbi.nlm.nih.gov/20566484"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "A Suttkus, S Rohn, S Weigel, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Aggrecan, link protein and tenascin-R are essential components of the perineuronal net to protect neurons against iron-induced oxidative stress."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2014)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cddis.2014.25"}], "href": "https://doi.org/10.1038/cddis.2014.25"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "24625978"}], "href": "https://pubmed.ncbi.nlm.nih.gov/24625978"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Andrea Poli, Aurelia Viglione, Raffaele Mazziotti, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Selective Disruption of Perineuronal Nets in Mice Lacking Crtl1 is Sufficient to Make Fear Memories Susceptible to Erasure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Neurobiol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12035-023-03314-x"}], "href": "https://doi.org/10.1007/s12035-023-03314-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "37022587"}], "href": "https://pubmed.ncbi.nlm.nih.gov/37022587"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Judith Sánchez-Ventura, Natalia Lago, Clara Penas, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Link Protein 1 Is Involved in the Activity-Dependent Modulation of Perineuronal Nets in the Spinal Cord."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Mol Sci (2024)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/ijms25084267"}], "href": "https://doi.org/10.3390/ijms25084267"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "38673852"}], "href": "https://pubmed.ncbi.nlm.nih.gov/38673852"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Elaine E Wirrig, Brian S Snarr, Mastan R Chintalapudi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cartilage link protein 1 (Crtl1), an extracellular matrix component playing an important role in heart development."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dev Biol (2007)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ydbio.2007.07.041"}], "href": "https://doi.org/10.1016/j.ydbio.2007.07.041"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "17822691"}], "href": "https://pubmed.ncbi.nlm.nih.gov/17822691"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mátyás Czipri, Jeffrey M Otto, Gabriella Cs-Szabó, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Genetic rescue of chondrodysplasia and the perinatal lethal effect of cartilage link protein deficiency."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Biol Chem (2003)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1074/jbc.M303329200"}], "href": "https://doi.org/10.1074/jbc.M303329200"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "12732630"}], "href": "https://pubmed.ncbi.nlm.nih.gov/12732630"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Uwe Rauch, Satoshi Hirakawa, Toshitaka Oohashi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Cartilage link protein interacts with neurocan, which shows hyaluronan binding characteristics different from CD44 and TSG-6."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Matrix Biol (2004)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.matbio.2003.11.007"}], "href": "https://doi.org/10.1016/j.matbio.2003.11.007"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "15062856"}], "href": "https://pubmed.ncbi.nlm.nih.gov/15062856"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Marie M Lockhart, Elaine E Wirrig, Aimee L Phelps, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Mef2c regulates transcription of the extracellular matrix protein cartilage link protein 1 in the developing murine heart."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS One (2013)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pone.0057073"}], "href": "https://doi.org/10.1371/journal.pone.0057073"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "23468913"}], "href": "https://pubmed.ncbi.nlm.nih.gov/23468913"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Craig S Rhodes, Tomoya Matsunobu, Yoshihiko Yamada "}, {"type": "b", "children": [{"type": "t", "text": "Analysis of a limb-specific regulatory element in the promoter of the link protein gene."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2019.08.104"}], "href": "https://doi.org/10.1016/j.bbrc.2019.08.104"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31470976"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31470976"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Brett L Ecker, Amanpreet Kaur, Stephen M Douglass, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Age-Related Changes in HAPLN1 Increase Lymphatic Permeability and Affect Routes of Melanoma Metastasis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Discov (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1158/2159-8290.CD-18-0168"}], "href": "https://doi.org/10.1158/2159-8290.CD-18-0168"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30279172"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30279172"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Lena Wiedmann, Francesca De Angelis Rigotti, Nuria Vaquero-Siguero, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Hyaluronan and Proteoglycan Link Protein 1 Activates the BMP4/Smad1/5/8 Signaling Pathway to Promote Osteogenic Differentiation: an Implication in Fracture Healing."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Biotechnol (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s12033-023-00677-3"}], "href": "https://doi.org/10.1007/s12033-023-00677-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "36737556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/36737556"}]}]}]}
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| NCBI Gene ID | 100874143 |
| API | |
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| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00358 has 12 functional associations with biological entities spanning 1 categories (gene, protein or microRNA) extracted from 2 datasets.
Click the + buttons to view associations for LINC00358 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| GEO Signatures of Differentially Expressed Genes for Gene Perturbations | gene perturbations changing expression of LINC00358 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00358 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |