LINC00393 Gene

Name long intergenic non-protein coding RNA 393
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent transcriptomic studies have identified LINC00393 as a long non‐coding RNA with context‐dependent roles in cancer. In cervical cancer, for instance, LINC00393 has been detected as a recurrent integration hotspot for human papillomavirus (HPV), suggesting that its genomic locus is susceptible to viral insertion events that may contribute to tumor development and serve as a marker of HPV‐associated cervical cancer subtypes and racial disparities in viral prevalence."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In breast cancer—particularly in the basal molecular subtype—LINC00393 is among a panel of enhancer‐related, H3K27ac‐dysregulated lncRNAs whose expression appears to be critical for cancer cell proliferation. Notably, pharmacological inhibition of CREBBP/EP300 bromodomains reduces H3K27 acetylation and downregulates LINC00393 expression, concomitantly curbing the growth of basal breast cancer cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " \n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Together, these findings suggest that LINC00393 may be mechanistically involved in tumorigenesis by acting as a site for viral integration in cervical cancer and by modulating epigenetically driven cell proliferation in breast cancer. Its dual implication as a potential biomarker and therapeutic target highlights the value of further functional investigations into its role across distinct cancer contexts."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Qiongzi Qiu, Qing Zhou, Aoran Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated analysis of virus and host transcriptomes in cervical cancer in Asian and Western populations."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2021.03.029"}], "href": "https://doi.org/10.1016/j.ygeno.2021.03.029"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33785400"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33785400"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Hongying Zhao, Xiaoqin Liu, Lei Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive landscape of epigenetic-dysregulated lncRNAs reveals a profound role of enhancers in carcinogenesis in BC subtypes."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Ther Nucleic Acids (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.omtn.2020.12.024"}], "href": "https://doi.org/10.1016/j.omtn.2020.12.024"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33575113"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33575113"}]}]}]}
NCBI Gene ID 100874156
API
Download Associations
Predicted Functions View LINC00393's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00393's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00393's ARCHS4 Predicted Functions.

Functional Associations

LINC00393 has 5 functional associations with biological entities spanning 1 categories (cell line, cell type or tissue) extracted from 1 datasets.

Click the + buttons to view associations for LINC00393 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00393 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.