| Name | long intergenic non-protein coding RNA 398 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a study of early nutritional influences on child development, researchers investigated how exclusive breastfeeding impacts DNA methylation alterations during infancy, which in turn appear to mediate long‐term BMI trajectories."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " The genome‐wide analysis identified 13 CpG sites in girls and 2 in boys that serve as mediators of the association between exclusive breastfeeding and longitudinal BMI. Notably, one of these CpG sites is located within the region encompassing LINC00398 alongside ALOX5AP. Although the precise functional role of LINC00398 is not fully delineated within this study, its presence among the loci exhibiting methylation variation suggests that it may contribute to the regulatory network involved in metabolic pathways—such as those governing insulin signaling and energy homeostasis—that are crucial for mediating early growth trajectories and potentially mitigating the risk of later overweight or obesity. These findings underscore the critical impact of the early postnatal period, where even brief durations of exclusive breastfeeding (3 to 5 months) can instigate epigenetic modifications with lasting effects on child growth and metabolic health."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Laurent Briollais, Denis Rustand, Catherine Allard, et al. "}, {"type": "b", "children": [{"type": "t", "text": "DNA methylation mediates the association between breastfeeding and early-life growth trajectories."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Epigenetics (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13148-021-01209-z"}], "href": "https://doi.org/10.1186/s13148-021-01209-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34937578"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34937578"}]}]}]}
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| NCBI Gene ID | 100874158 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00398 has 391 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 6 datasets.
Click the + buttons to view associations for LINC00398 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00398 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00398 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00398 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| GTEx Tissue Sample Gene Expression Profiles | tissue samples with high or low expression of LINC00398 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00398 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00398 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |