LINC00423 Gene

Name long intergenic non-protein coding RNA 423
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent research has demonstrated that LINC00423 functions as a tumor suppressor in retroperitoneal liposarcoma by modulating key signaling pathways. Specifically, LINC00423 is downregulated in tumor tissues, and its overexpression leads to significant inhibition of cancer cell growth both in vitro and in vivo. Mechanistic studies revealed that LINC00423 destabilizes the protein nuclear factor of activated T-cells 3 (NFATC3) at the post‐transcriptional level, thereby negatively regulating the MAPK signaling pathway at the transcriptional level."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In parallel, advances in computational methods and sampling algorithms—including the Fisher's ratio, Holdout, and Random samplers—have enhanced the analysis of defective genetic pathways in complex cancer phenotypes such as triple negative breast cancer, highlighting the critical role of robust genomic analyses in understanding tumor behavior."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Together, these studies underscore the importance of integrating functional lncRNA research with innovative genomic sampling techniques to elucidate the molecular underpinnings of cancer.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Yong Zhang, Hanxing Tong, Junyi He, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Linc00423 as a tumor suppressor in retroperitoneal liposarcoma via activing MAPK signaling pathway through destabilizing of NFATC3."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-019-1658-2"}], "href": "https://doi.org/10.1038/s41419-019-1658-2"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31160581"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31160581"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Ana Cernea, Juan Luis Fernández-Martínez, Enrique J deAndrés-Galiana, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Robust pathway sampling in phenotype prediction. Application to triple negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Bioinformatics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12859-020-3356-6"}], "href": "https://doi.org/10.1186/s12859-020-3356-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32164540"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32164540"}]}]}]}
NCBI Gene ID 100874167
API
Download Associations
Predicted Functions View LINC00423's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00423's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00423's ARCHS4 Predicted Functions.

Functional Associations

LINC00423 has 165 functional associations with biological entities spanning 3 categories (disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 9 datasets.

Click the + buttons to view associations for LINC00423 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00423 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00423 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00423 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00423 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00423 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00423 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00423 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00423 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00423 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.