LINC00441 Gene

Name long intergenic non-protein coding RNA 441
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long noncoding RNA LINC00441 plays a critical oncogenic role in several cancer types by modulating tumor suppressor pathways through distinct molecular mechanisms. In hepatocellular carcinoma (HCC), LINC00441 is aberrantly upregulated and predominantly localized in the nucleus, where its increased expression is inversely correlated with that of the neighboring tumor suppressor gene RB1. Functionally, LINC00441 promotes cell proliferation by recruiting DNA methyltransferases—specifically DNMT3A—to the RB1 promoter, leading to hypermethylation and consequent transcriptional silencing of RB1. Transcription factors such as TCF-4 further potentiate LINC00441 expression by enhancing H3K27 acetylation, thereby reinforcing its oncogenic impact."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In gastric cancer, similar epigenetic suppression of RB1 is mediated by LINC00441 through the recruitment of DNMT1, which also results in enhanced tumor cell proliferation and tumor progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Moreover, in cervical cancer, LINC00441 exerts its oncogenic function via a distinct mechanism. It acts as a competing endogenous RNA (ceRNA) by sponging miR-450b-5p, leading to the derepression and upregulation of the RAB10 gene—a process that ultimately drives increased cellular proliferation and motility."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings underscore that LINC00441 contributes to cancer progression by epigenetically silencing the tumor suppressor RB1 and by disrupting microRNA-mediated regulatory networks. Its multifunctional regulatory roles make LINC00441 a promising target for therapeutic intervention in multiple malignancies."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Junwei Tang, Yu Xie, Xiaoliang Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bidirectional transcription of Linc00441 and RB1 via H3K27 modification-dependent way promotes hepatocellular carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2017)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/cddis.2017.81"}], "href": "https://doi.org/10.1038/cddis.2017.81"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28300839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28300839"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jianping Zhou, Jun Shi, Xingli Fu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Linc00441 interacts with DNMT1 to regulate RB1 gene methylation and expression in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.23928"}], "href": "https://doi.org/10.18632/oncotarget.23928"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30680063"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30680063"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Haiyan Han, Qingchun Shao, Xuejie Liu "}, {"type": "b", "children": [{"type": "t", "text": "LINC00441 promotes cervical cancer progression by modulating miR-450b-5p/RAB10 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-020-01400-x"}], "href": "https://doi.org/10.1186/s12935-020-01400-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32774162"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32774162"}]}]}]}
Synonyms NCRNA-RB1, RB1-DT
NCBI Gene ID 100862704
API
Download Associations
Predicted Functions View LINC00441's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00441's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00441's ARCHS4 Predicted Functions.

Functional Associations

LINC00441 has 773 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 10 datasets.

Click the + buttons to view associations for LINC00441 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00441 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00441 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00441 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00441 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00441 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00441 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00441 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00441 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00441 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00441 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.