| Name | long intergenic non-protein coding RNA 458 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00458, which encodes the long non‐coding RNA “ES3”, has been implicated in cell type–specific regulatory networks. In vascular smooth muscle cells, LINC00458/lncRNA‐ES3 is transcriptionally regulated by the basic helix–loop–helix transcription factor Bhlhe40, and its upregulation under high‐glucose conditions promotes calcification and cellular senescence. Mechanistically, it functions as a competing endogenous RNA that sponges multiple microRNAs (including miR‑95‑5p, miR‑6776‑5p, miR‑3620‑5p, and miR‑4747‑5p) to modulate downstream targets that favor vascular pathology."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition, LINC00458/lncRNA‑ES3 has been shown to be significantly upregulated in breast cancer, particularly in high‐grade, high‐stage, and HER2‑positive tumors. Its expression correlates with oncogenic signaling downstream of HER2, while it decreases during neural differentiation, suggesting that LINC00458 participates in maintaining a proliferative, less differentiated state in tumor cells."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, LINC00458/lncRNA‑ES3 exacerbates vascular calcification and senescence by acting as a competing endogenous RNA for miR‑34c‑5p, thereby enhancing the expression of pro‐senescence factors such as BMF. This regulatory axis further supports its role in vascular pathology under diabetic conditions."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Overall, these findings indicate that LINC00458/lncRNA‑ES3 functions as a context‐dependent regulator, contributing to vascular calcification/senescence and breast cancer proliferation through modulation of specific microRNA networks.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jia-Yu Zhong, Xing-Jun Cui, Jun-Kun Zhan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA-ES3 inhibition by Bhlhe40 is involved in high glucose-induced calcification/senescence of vascular smooth muscle cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ann N Y Acad Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/nyas.14381"}], "href": "https://doi.org/10.1111/nyas.14381"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32483833"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32483833"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Mostafa Keshavarz, Malek Hossein Asadi, Ali Riahi-Madvar "}, {"type": "b", "children": [{"type": "t", "text": "Upregulation of pluripotent long noncoding RNA ES3 in HER2-positive breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Biochem (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcb.29152"}], "href": "https://doi.org/10.1002/jcb.29152"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31211468"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31211468"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xiao Lin, Jun-Kun Zhan, Jia-Yu Zhong, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA-ES3/miR-34c-5p/BMF axis is involved in regulating high-glucose-induced calcification/senescence of VSMCs."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.101758"}], "href": "https://doi.org/10.18632/aging.101758"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30654331"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30654331"}]}]}]}
|
| Synonyms | LNCRNA-ES3 |
| NCBI Gene ID | 100507428 |
| API | |
| Download Associations | |
| Predicted Functions |
![]() |
| Co-expressed Genes |
![]() |
| Expression in Tissues and Cell Lines |
![]() |
LINC00458 has 161 functional associations with biological entities spanning 5 categories (organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 7 datasets.
Click the + buttons to view associations for LINC00458 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene Expression Profiles | cell lines with high or low expression of LINC00458 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset. | |
| GEO Signatures of Differentially Expressed Genes for Diseases | disease perturbations changing expression of LINC00458 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset. | |
| GEO Signatures of Differentially Expressed Genes for Kinase Perturbations | kinase perturbations changing expression of LINC00458 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset. | |
| GEO Signatures of Differentially Expressed Genes for Small Molecules | small molecule perturbations changing expression of LINC00458 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset. | |
| GEO Signatures of Differentially Expressed Genes for Viral Infections | virus perturbations changing expression of LINC00458 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00458 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00458 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |