LINC00461 Gene

Name long intergenic non-protein coding RNA 461
Description This is an evolutionarily conserved gene that produces alternatively spliced long non-coding RNAs that may be expressed predominantly in the brain and visual cortex. These transcripts may be involved in tumorigenesis, as depletion by siRNA suppressed glioma cell division. Transcripts may also bind to and regulate the activity of miR-411-5p and argonaut 2, thereby altering the expression of genes involved in tumor growth. [provided by RefSeq, Nov 2017]
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00461 is a long non‐coding RNA that has emerged as a critical regulator in multiple human diseases, particularly in various cancers. In several independent studies, LINC00461 was found to be upregulated in malignancies such as multiple myeloma, hepatocellular carcinoma, breast cancer, non‐small cell lung cancer, rectal cancer, gastric cancer, glioma, head and neck squamous cell carcinoma, glioblastoma, and acute myeloid leukemia, where its high expression is typically associated with advanced stage, enhanced cell proliferation, migration, invasion, epithelial–mesenchymal transition (EMT), and even chemoresistance (1,2,3,4,5,6,8,13,14,15,11). Mechanistically, LINC00461 often acts as a competing endogenous RNA by sponging specific microRNAs – for instance, miR‑15a/16 in myeloma (1), miR‑411‑5p in glioma (2), miR‑149‑5p in hepatocellular carcinoma (3), miR‑30a‑5p in breast and osteoarthritic chondrocytes (4,9), miR‑593‑5p in rectal cancer (5), miR‑4478 in non‐small cell lung cancer (6), miR‑942 in renal cell carcinoma (7), miR‑216a in glioma (14) and miR‑195 in head and neck cancer (13). These interactions serve to de‐repress downstream targets – including genes such as BCL‑2, TOP2A, LRIG2, ITGB3, CCND1, E2F1, LSD1, ZEB2, AQP4, and others – that regulate critical pathways involved in cell cycle progression, survival, and motility (3,4,5,6,7,8,13,14,15)."}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In addition to its oncogenic roles, LINC00461 has also been implicated in non‐malignant conditions. Genetic studies have associated alterations at the LINC00461 locus with neuropsychiatric traits and schizophrenia, highlighting a potential role in neurodevelopment and the modulation of hippocampal function (12,16). Furthermore, its expression in mesenchymal stromal cell–derived exosomes has been suggested to contribute to the tumor microenvironment by enhancing cancer cell proliferation (1).\n\n Collectively, these findings underscore that LINC00461 acts as a pivotal molecular sponge, interfacing with multiple microRNAs to fine‐tune gene expression networks that drive tumor progression, chemoresistance, and possibly neurodevelopmental processes. Its consistent upregulation in various cancers and linkage to adverse clinical features render LINC00461 a promising candidate for both diagnostic biomarker development and targeted therapeutic intervention (1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16).\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n "}, {"type": "b", "children": [{"type": "t", "text": "Citations:"}]}, {"type": "t", "text": "<br>."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "16"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Mingyang Deng, Huan Yuan, Sufang Liu, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00461 mediates cisplatin resistance of rectal cancer via miR-593-5p/CCND1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2019.109740"}], "href": "https://doi.org/10.1016/j.biopha.2019.109740"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31972361"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31972361"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Qingxin Meng, Ming Liu, Ruyi Cheng "}, {"type": "b", "children": [{"type": "t", "text": "LINC00461/miR-4478/E2F1 feedback loop promotes non-small cell lung cancer cell proliferation and migration."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biosci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BSR20191345"}], "href": "https://doi.org/10.1042/BSR20191345"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31934717"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31934717"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Yicheng Chen, Jinkui He, Changju Su, et al. 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Synonyms VISC-1A, ECONEXIN, VISC, EYELINC1, VISC-1B, VISC-2
NCBI Gene ID 645323
API
Download Associations
Predicted Functions View LINC00461's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00461's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00461's ARCHS4 Predicted Functions.

Functional Associations

LINC00461 has 1,085 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 23 datasets.

Click the + buttons to view associations for LINC00461 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00461 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00461 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00461 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00461 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00461 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
CellMarker Gene-Cell Type Associations cell types associated with LINC00461 gene from the CellMarker Gene-Cell Type Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00461 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00461 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00461 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00461 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00461 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00461 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00461 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00461 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00461 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00461 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00461 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00461 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00461 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00461 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations gene perturbations changing expression of LINC00461 gene from the MSigDB Signatures of Differentially Expressed Genes for Cancer Gene Perturbations dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00461 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00461 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.