LINC00466 Gene

Name long intergenic non-protein coding RNA 466
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00466 is an oncogenic long noncoding RNA whose dysregulated expression has been reported in several cancer types. In lung adenocarcinoma, LINC00466 is highly expressed and promotes tumor progression by sponging miR‐144, which leads to the up‐regulation of HOXA10 and enhanced cell proliferation, invasion, migration, and reduced apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In triple‐negative breast cancer, increased LINC00466 levels serve as a prognostic biomarker and its oncogenic role is mediated by acting as a sponge for miR‐539-5p, ultimately facilitating cell proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " Additionally, in breast cancer, LINC00466 has been implicated in competing endogenous RNA (ceRNA) networks where it interacts with miR-204 to regulate downstream targets, further supporting its role as a tumor promoter and a potential prognostic indicator."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "3", "end_ref": "5"}]}, {"type": "t", "text": " In glioma, two independent studies have identified that LINC00466 is upregulated and enhances malignancy by different mechanisms: one study reported that LINC00466 sponges miR-137 to up-regulate PPP1R14B, thereby promoting proliferation, metastasis, and resistance to temozolomide"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": ", while another study demonstrated that LINC00466 is transcriptionally activated by YY1 and acts as a sponge for miR-508, leading to the modulation of CHEK1 and contributing to tumor aggressiveness."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": " Finally, in lung squamous cell carcinoma, LINC00466 has emerged within ceRNA networks as a potential biomarker that distinguishes smoking-related cases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Collectively, these findings highlight that LINC00466 functions as a ceRNA in various malignancies by sequestering tumor-suppressive miRNAs, resulting in the up-regulation of oncogenic targets and promoting tumorigenic processes such as proliferation, invasion, metastasis, and chemoresistance.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Tiangang Ma, Yanbing Hu, Yingxue Guo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Tumor-Promoting Activity of Long Noncoding RNA LINC00466 in Lung Adenocarcinoma via miR-144-Regulated HOXA10 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Am J Pathol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ajpath.2019.06.014"}], "href": "https://doi.org/10.1016/j.ajpath.2019.06.014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31381886"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31381886"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Jiaqi Liu, Heshan Yu, Haiyun Cui, et al. "}, {"type": "b", "children": [{"type": "t", "text": "lncRNA LINC000466 Predicts the Prognosis and Promotes the Progression of Triple-negative Breast Cancer via Modulating miR-539-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Clin Breast Cancer (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.clbc.2022.01.011"}], "href": "https://doi.org/10.1016/j.clbc.2022.01.011"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35216934"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35216934"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Chundi Gao, Huayao Li, Jing Zhuang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The construction and analysis of ceRNA networks in invasive breast cancer: a study based on The Cancer Genome Atlas."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Manag Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/CMAR.S182521"}], "href": "https://doi.org/10.2147/CMAR.S182521"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30588106"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30588106"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jing-Jing Wang, Yue-Qing Huang, Wei Song, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive analysis of the lncRNA‑associated competing endogenous RNA network in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Rep (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/or.2019.7374"}], "href": "https://doi.org/10.3892/or.2019.7374"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31638237"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31638237"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xue Wang, Chundi Gao, Fubin Feng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Construction and Analysis of Competing Endogenous RNA Networks for Breast Cancer Based on TCGA Dataset."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Res Int (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2020/4078596"}], "href": "https://doi.org/10.1155/2020/4078596"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32775417"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32775417"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Mingfei Zhao, Yijie Shao, Jinfang Xu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00466 Impacts Cell Proliferation, Metastasis and Sensitivity to Temozolomide of Glioma by Sponging miR-137 to Regulate PPP1R14B Expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Onco Targets Ther (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/OTT.S273264"}], "href": "https://doi.org/10.2147/OTT.S273264"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33642868"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33642868"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Fei Li, Zheng-Ze Shen, Chao-Ming Xiao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "YY1-mediated up-regulation of lncRNA LINC00466 facilitates glioma progression via miR-508/CHEK1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Gene Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jgm.3287"}], "href": "https://doi.org/10.1002/jgm.3287"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33037684"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33037684"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Yan Yao, Tingting Zhang, Lingyu Qi, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Competitive Endogenous RNA Network Construction and Comparison of Lung Squamous Cell Carcinoma in Smokers and Nonsmokers."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dis Markers (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1155/2019/5292787"}], "href": "https://doi.org/10.1155/2019/5292787"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31885738"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31885738"}]}]}]}
NCBI Gene ID 199899
API
Download Associations
Predicted Functions View LINC00466's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00466's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00466's ARCHS4 Predicted Functions.

Functional Associations

LINC00466 has 992 functional associations with biological entities spanning 6 categories (molecular profile, organism, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for LINC00466 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00466 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00466 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00466 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00466 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00466 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00466 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00466 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00466 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00466 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00466 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00466 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00466 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00466 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00466 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00466 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00466 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00466 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00466 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.