LINC00475 Gene

Name long intergenic non-protein coding RNA 475
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long intergenic non‐coding RNA 00475 (LINC00475) has emerged as an oncogenic regulator in multiple cancer types. In glioma, for example, one study demonstrated that under hypoxic conditions LINC00475 is overexpressed and promotes tumor progression by binding and down‐regulating miR‑449b‑5p. This interaction leads to increased expression of AGAP2, enhanced focal adhesion kinase (FAK) phosphorylation, and up‐regulation of HIF‑1α, collectively driving cell proliferation, migration, invasion, and reduced apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In papillary thyroid carcinoma, LINC00475 is similarly upregulated and predominantly localized in the cytoplasm, where it functions as a molecular sponge for miR‑376c‑3p. This sequestration results in the derepression of the oncogene ZCCHC12, thereby enhancing cell viability, proliferation, migration, and invasion."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Additional evidence in glioma shows that LINC00475 can interact with miR‑141‑3p to modulate the expression of YAP1, further contributing to tumor progression and serving as a marker of poor prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, large‐scale genomic analyses in clear cell renal cell carcinoma have identified LINC00475 as one of several upregulated long non‐coding RNAs whose expression correlates with overall survival, suggesting its potential utility as a prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " In gastric cancer, metabolic pathway–related profiling also revealed LINC00475 to be significantly upregulated, further associating it with tumorigenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these findings suggest that LINC00475 exerts its oncogenic effects by acting as a competing endogenous RNA (ceRNA) that sequesters tumor‐suppressive microRNAs, thereby elevating the expression of downstream targets involved in key signaling pathways. This multi‐faceted role in promoting cell proliferation, migration, and invasion highlights LINC00475 as a promising candidate for targeted therapeutic intervention and biomarker development across several malignancies.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Lei Yu, Si Gui, Yawei Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-protein coding RNA 00475 silencing acts as a tumor suppressor in glioma under hypoxic condition by impairing microRNA-449b-5p-dependent AGAP2 up-regulation."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ther Adv Med Oncol (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1177/1758835920940936"}], "href": "https://doi.org/10.1177/1758835920940936"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32849915"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32849915"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Yarong Yang, Wenjuan Hua, Mei Zeng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A ceRNA network mediated by LINC00475 in papillary thyroid carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Open Med (Wars) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1515/med-2021-0389"}], "href": "https://doi.org/10.1515/med-2021-0389"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34950770"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34950770"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Mingjun Yu, Bolong Yi, Wen Zhou, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Linc00475 promotes the progression of glioma by regulating the miR-141-3p/YAP1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.16100"}], "href": "https://doi.org/10.1111/jcmm.16100"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33336871"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33336871"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Wanting Hou, Qiulin Tang, Feng Bi "}, {"type": "b", "children": [{"type": "t", "text": "[Comprehensive analysis of the aberrantly expressed profiles of lncRNAs, miRNAs and the regulation network of the associated ceRNAs in clear cell renal cell carcinoma]."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sheng Wu Yi Xue Gong Cheng Xue Za Zhi (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7507/1001-5515.201801057"}], "href": "https://doi.org/10.7507/1001-5515.201801057"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31016944"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31016944"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Xiaoyan Mo, Yuanyuan Wu, Li Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Global expression profiling of metabolic pathway-related lncRNAs in human gastric cancer and the identification of RP11-555H23.1 as a new diagnostic biomarker."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.22692"}], "href": "https://doi.org/10.1002/jcla.22692"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30320481"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30320481"}]}]}]}
Synonyms C9ORF44
NCBI Gene ID 158314
API
Download Associations
Predicted Functions View LINC00475's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00475's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00475's ARCHS4 Predicted Functions.

Functional Associations

LINC00475 has 1,845 functional associations with biological entities spanning 5 categories (molecular profile, disease, phenotype or trait, chemical, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for LINC00475 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00475 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00475 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00475 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00475 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00475 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00475 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00475 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Disease Associations diseases associated with LINC00475 gene/protein from the curated CTD Gene-Disease Associations dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00475 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00475 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00475 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00475 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00475 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00475 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00475 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00475 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00475 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00475 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00475 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00475 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00475 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00475 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.