LINC00482 Gene

Name long intergenic non-protein coding RNA 482
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have implicated the long intergenic non‐coding RNA LINC00482 as a regulatory RNA with potential roles in multiple disease contexts. In a heart failure investigation, LINC00482 was identified as one of four hub lncRNAs within a condition‐specific lncRNA–miRNA–mRNA regulatory network, suggesting that it may modulate key signaling sub‐pathways such as those related to MAPK and chemokine signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In AFP‐negative hepatocellular carcinoma, LINC00482 was part of a competitive endogenous RNA (ceRNA) network where its expression, together with other lncRNAs, was significantly associated with overall patient survival, indicating its value as a diagnostic and prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n In bladder cancer, LINC00482 was found to be highly expressed in both cancer tissues and cell lines. Its expression correlated with that of matrix metallopeptidase 15 (MMP15) and interactions with transcription factor FOXA1 were investigated, suggesting a role in promoting tumor progression through the regulation of extracellular matrix remodeling and invasion processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in an analysis of spondyloarthropathy/ankylosing spondylitis, LINC00482 emerged as one of several hub lncRNAs within a network of competitive regulatory interactions, which implies that it may contribute to inflammatory signaling pathways linked to disease pathogenesis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "t", "text": "\n Although the precise mechanisms by which LINC00482 influences these diverse biological processes remain to be fully elucidated, current evidence indicates that it plays a role in modulating key pathways involved in cellular signaling, stress responses, and extracellular interactions across cardiovascular, hepatic, urological, and rheumatological disorders.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Dong-Mei Han "}, {"type": "b", "children": [{"type": "t", "text": "Sub-pathway based approach to systematically track candidate sub-pathway biomarkers for heart failure."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Exp Ther Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/etm.2019.7319"}], "href": "https://doi.org/10.3892/etm.2019.7319"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30936989"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30936989"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Zijing Liu, Youwei Pu, Yixi Bao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Investigation of Potential Molecular Biomarkers for Diagnosis and Prognosis of AFP-Negative HCC."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Gen Med (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.2147/IJGM.S323868"}], "href": "https://doi.org/10.2147/IJGM.S323868"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34408477"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34408477"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Yizhuo Wang, Liping Zhang, Na Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Silencing LINC00482 inhibits tumor-associated inflammation and angiogenesis through down-regulation of MMP-15 "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "via"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " FOXA1 in bladder cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Aging (Albany NY) (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/aging.202247"}], "href": "https://doi.org/10.18632/aging.202247"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33323547"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33323547"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Ming Ding, Ting-Jin Guan, Chuan-Yin Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of pathways significantly associated with spondyloarthropathy/ankylosing spondylitis using the sub‑pathway method."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Mol Med Rep (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/mmr.2018.9395"}], "href": "https://doi.org/10.3892/mmr.2018.9395"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30132545"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30132545"}]}]}]}
Synonyms C17ORF55
Proteins CQ055_HUMAN
NCBI Gene ID 284185
API
Download Associations
Predicted Functions View LINC00482's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00482's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00482's ARCHS4 Predicted Functions.

Functional Associations

LINC00482 has 1,951 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 27 datasets.

Click the + buttons to view associations for LINC00482 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00482 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00482 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00482 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00482 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00482 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00482 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00482 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00482 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
CTD Gene-Chemical Interactions chemicals interacting with LINC00482 gene/protein from the curated CTD Gene-Chemical Interactions dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00482 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00482 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00482 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00482 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00482 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00482 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00482 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00482 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00482 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00482 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00482 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00482 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00482 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene Expression Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00482 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00482 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00482 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00482 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00482 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.