LINC00488 Gene

Name long intergenic non-protein coding RNA 488
Summary
{"type": "root", "children": [{"type": "t", "text": "<head>\n <meta charset=\"UTF-8\">\n <title>Summary of LINC00488 Function Across Malignancies</title>\n </head>\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n LINC00488 has emerged as an oncogenic long non‐coding RNA with a pivotal role in tumor progression across several cancer types. In hepatocellular carcinoma, LINC00488 functions as a competing endogenous RNA (ceRNA) that sponges miR‑330‑5p, thereby releasing TLN1 to enhance cellular proliferation, angiogenesis, and in vivo tumor growth while suppressing apoptosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " Similarly, in thyroid cancer, LINC00488 is highly expressed and acts to bind miR‑376a‑3p, which results in the upregulation of its target gene PON2; this mechanism promotes proliferation, migration, and invasion, and concurrently inhibits apoptotic processes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In retinoblastoma, LINC00488 also exerts oncogenic effects by sponging miR‑30a‑5p to regulate EPHB2, supporting malignant cell behaviors both in vitro and in vivo."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " In esophageal cancer, upregulation of LINC00488 is associated with enhanced cell viability, migration, and wound healing, owing to its negative regulation of miR‑485‑5p, which correlates with increased metastatic potential and poorer patient prognosis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": " Additionally, evidence from clear cell renal cell carcinoma indicates that LINC00488 contributes to tumor proliferation and resistance to apoptosis when included in a prognostic lncRNA signature."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Finally, in colorectal cancer, LINC00488 is identified as one of the prognostically relevant differentially expressed lncRNAs, with higher levels correlating with unfavorable overall survival."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Jun Gao, Xiangbao Yin, Xin Yu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00488 functions as a ceRNA to regulate hepatocellular carcinoma cell growth and angiogenesis through miR-330-5."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Dig Liver Dis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.dld.2019.03.012"}], "href": "https://doi.org/10.1016/j.dld.2019.03.012"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31005556"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31005556"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Fuyuan Xie, Longgen Li, Yuting Luo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00488 facilitates thyroid cancer cell progression through miR-376a-3p/PON2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biosci Rep (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BSR20201603"}], "href": "https://doi.org/10.1042/BSR20201603"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33600548"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33600548"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xuehao Cui, Tingyi Liang, Xunda Ji, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00488 Induces Tumorigenicity in Retinoblastoma by Regulating microRNA-30a-5p/EPHB2 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Ocul Immunol Inflamm (2023)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/09273948.2022.2037659"}], "href": "https://doi.org/10.1080/09273948.2022.2037659"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35404750"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35404750"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Hongbo Xu, Yan Ye "}, {"type": "b", "children": [{"type": "t", "text": "LINC00488 stimulates the progression of esophageal cancer by targeting microRNA-485-5p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncol Lett (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3892/ol.2020.12347"}], "href": "https://doi.org/10.3892/ol.2020.12347"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33376519"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33376519"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Jiarun Zhang, Xiaotong Zhang, Chiyuan Piao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A long non-coding RNA signature to improve prognostic prediction in clear cell renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2019.109079"}], "href": "https://doi.org/10.1016/j.biopha.2019.109079"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31351427"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31351427"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Yu Liang, Cheng Zhang, Ming-Hui Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification and prediction of novel non-coding and coding RNA-associated competing endogenous RNA networks in colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "World J Gastroenterol (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3748/wjg.v24.i46.5259"}], "href": "https://doi.org/10.3748/wjg.v24.i46.5259"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30581274"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30581274"}]}]}]}
Synonyms C3ORF66
NCBI Gene ID 677779
API
Download Associations
Predicted Functions View LINC00488's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00488's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00488's ARCHS4 Predicted Functions.

Functional Associations

LINC00488 has 427 functional associations with biological entities spanning 6 categories (molecular profile, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 17 datasets.

Click the + buttons to view associations for LINC00488 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00488 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00488 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00488 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00488 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00488 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00488 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00488 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00488 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00488 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00488 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00488 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00488 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00488 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00488 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00488 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00488 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.
TISSUES Experimental Tissue Protein Expression Evidence Scores tissues with high expression of LINC00488 protein in proteomics datasets from the TISSUES Experimental Tissue Protein Expression Evidence Scores dataset.