LINC00499 Gene

Name long intergenic non-protein coding RNA 499
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n In a study of expression quantitative trait loci (cis‐eQTLs) in post‐mortem human brain tissue, researchers screened schizophrenia and affective disorder–associated single nucleotide polymorphisms (SNPs) for effects on gene expression, and they identified 2,224 cis‐eQTLs influencing 40 genes – including 11 non‐coding RNAs such as LINC00499 (1). Although the functional mechanisms of LINC00499 were not dissected in detail in this work, its identification among the non‐coding RNAs regulated by disease‐associated SNPs indicates that it may have a regulatory role in modulating gene expression in a region‐specific manner within the brain. Consequently, LINC00499 is suggested to contribute to the transcriptional networks underlying the risk of schizophrenia and affective disorders, highlighting the potential impact of non‐coding RNAs in the pathogenesis of these complex psychiatric conditions (1)."}]}, {"type": "t", "text": "\n "}, {"type": "p", "children": [{"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": ""}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Oneil G Bhalala, Artika P Nath, Michael Inouye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Identification of expression quantitative trait loci associated with schizophrenia and affective disorders in normal brain tissue."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "PLoS Genet (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1371/journal.pgen.1007607"}], "href": "https://doi.org/10.1371/journal.pgen.1007607"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30142156"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30142156"}]}]}]}
NCBI Gene ID 100874047
API
Download Associations
Predicted Functions View LINC00499's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00499's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00499's ARCHS4 Predicted Functions.

Functional Associations

LINC00499 has 152 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 4 datasets.

Click the + buttons to view associations for LINC00499 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00499 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00499 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00499 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00499 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.