LINC00511 Gene

Name long intergenic non-protein coding RNA 511
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Long intergenic noncoding RNA 00511 (LINC00511) is increasingly recognized as a multifunctional regulator in cancer biology. In the majority of studies, LINC00511 is aberrantly up‐regulated in malignancies such as breast cancer, pancreatic ductal adenocarcinoma, tongue squamous cell carcinoma, ER‐negative breast cancer, glioma, hepatocellular carcinoma, lung cancer, T‐cell acute lymphoblastic leukemia, and colorectal cancer."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "9"}]}, {"type": "t", "text": " Its overexpression frequently correlates with advanced tumor stage, increased proliferation, enhanced migration and invasion, epithelial‐mesenchymal transition (EMT), cancer stemness, and the emergence of chemo‐ or radio‐resistance."}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Mechanistically, LINC00511 exerts these oncogenic roles both at the post‐transcriptional and epigenetic levels. In many cancers LINC00511 functions as a competing endogenous RNA (ceRNA) by sponging multiple tumor‐suppressive microRNAs (e.g. miR‑185‑3p, miR‑765, miR‑29c, miR‑150, miR‑424, among others) to derepress target oncogenes—such as E2F1, VEGFA, LAMC2, CDK6, STAT3, and PKM2—that drive cell cycle progression and metastasis."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}, {"type": "fg_f", "ref": "3"}, {"type": "fg_fs", "start_ref": "5", "end_ref": "9"}]}, {"type": "t", "text": " In addition, LINC00511 can recruit epigenetic effectors—such as enhancer of zeste homolog 2 (EZH2) and LSD1—to repress tumor‐suppressor genes, further promoting oncogenic signaling. Its involvement in the regulation of vesicular trafficking, invadopodia biogenesis, and exosome secretion additionally underscores its role in facilitating tumor metastasis and the establishment of chemoresistant phenotypes.\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Notably, while the majority of studies support an oncogenic function for LINC00511, one investigation in osteosarcoma revealed that its overexpression was associated with reduced proliferation, enhanced apoptosis, and improved patient outcomes, suggesting that the function of LINC00511 is context‐dependent."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "10"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n In summary, LINC00511 acts predominantly as an oncogene by promoting tumor growth, metastasis, EMT, cancer stemness, and drug resistance through a network of ceRNA interactions and epigenetic modulations. Its aberrant expression across multiple cancer types and its strong association with poor clinical outcomes make LINC00511 a promising prognostic biomarker and a potential therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Guanming Lu, Yueyong Li, Yanfei Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00511 contributes to breast cancer tumourigenesis and stemness by inducing the miR-185-3p/E2F1/Nanog axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-018-0945-6"}], "href": "https://doi.org/10.1186/s13046-018-0945-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30482236"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30482236"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Xiaohui Zhao, Yimin Liu, Zhihua Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Linc00511 acts as a competing endogenous RNA to regulate VEGFA expression through sponging hsa-miR-29b-3p in pancreatic ductal adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.13351"}], "href": "https://doi.org/10.1111/jcmm.13351"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "28984028"}], "href": "https://pubmed.ncbi.nlm.nih.gov/28984028"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Junhai Ding, Changxi Yang, Sen Yang "}, {"type": "b", "children": [{"type": "t", "text": "LINC00511 interacts with miR-765 and modulates tongue squamous cell carcinoma progression by targeting LAMC2."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Oral Pathol Med (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jop.12677"}], "href": "https://doi.org/10.1111/jop.12677"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "29315846"}], "href": "https://pubmed.ncbi.nlm.nih.gov/29315846"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Jian Zhang, Shiyao Sui, Hao Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The transcriptional landscape of lncRNAs reveals the oncogenic function of LINC00511 in ER-negative breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Death Dis (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/s41419-019-1835-3"}], "href": "https://doi.org/10.1038/s41419-019-1835-3"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31395854"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31395854"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Chen Li, Hongjiang Liu, Jipeng Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00511 induced by SP1 accelerates the glioma progression through targeting miR-124-3p/CCND2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Mol Med (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/jcmm.14331"}], "href": "https://doi.org/10.1111/jcmm.14331"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30973678"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30973678"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Di Wang, Ketong Liu, Erdong Chen "}, {"type": "b", "children": [{"type": "t", "text": "LINC00511 promotes proliferation and invasion by sponging miR-515-5p in gastric cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Mol Biol Lett (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s11658-020-0201-x"}], "href": "https://doi.org/10.1186/s11658-020-0201-x"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32042282"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32042282"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "F-Y Zhu, S-R Zhang, L-H Wang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00511 promotes the progression of non-small cell lung cancer through downregulating LATS2 and KLF2 by binding to EZH2 and LSD1."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Eur Rev Med Pharmacol Sci (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.26355/eurrev_201910_19149"}], "href": "https://doi.org/10.26355/eurrev_201910_19149"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31646568"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31646568"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Shengli Li, Wenwen Guo, Huayun Geng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00511 exacerbated T-cell acute lymphoblastic leukemia via miR-195-5p/LRRK1 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biosci Rep (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1042/BSR20193631"}], "href": "https://doi.org/10.1042/BSR20193631"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32242897"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32242897"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Shuzhen Sun, Chao Xia, Yapo Xu "}, {"type": "b", "children": [{"type": "t", "text": "HIF-1α induced lncRNA LINC00511 accelerates the colorectal cancer proliferation through positive feedback loop."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biomed Pharmacother (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.biopha.2020.110014"}], "href": "https://doi.org/10.1016/j.biopha.2020.110014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32092829"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32092829"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Suchi Qiao, Ke Qi, Chang Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long intergenic non-coding RNA 511 correlates with improved prognosis, and hinders osteosarcoma progression both in vitro and in vivo."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Clin Lab Anal (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcla.23164"}], "href": "https://doi.org/10.1002/jcla.23164"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31893577"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31893577"}]}]}]}
Synonyms LCAL5, onco-lncRNA-12
NCBI Gene ID 400619
API
Download Associations
Predicted Functions View LINC00511's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00511's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00511's ARCHS4 Predicted Functions.

Functional Associations

LINC00511 has 760 functional associations with biological entities spanning 4 categories (molecular profile, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 15 datasets.

Click the + buttons to view associations for LINC00511 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq tissue samples with high or low expression of LINC00511 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by RNA-seq dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00511 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00511 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00511 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00511 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00511 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00511 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00511 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWAS Catalog SNP-Phenotype Associations phenotypes associated with LINC00511 gene in GWAS datasets from the GWAS Catalog SNP-Phenotype Associations dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00511 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00511 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00511 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00511 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles cell types and tissues with high or low DNA methylation of LINC00511 gene relative to other cell types and tissues from the Roadmap Epigenomics Cell and Tissue DNA Methylation Profiles dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00511 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.