LINC00515 Gene

Name long intergenic non-protein coding RNA 515
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00515, a long non‐coding RNA, has been implicated in diverse biological processes that affect both cancer progression and non‐cancerous conditions. In high‐grade serous ovarian cancer, transcriptome analyses revealed reduced LINC00515 expression in cisplatin‐resistant cells, suggesting that under certain contexts LINC00515 may play a regulatory role in drug response."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In contrast, in melphalan‐resistant multiple myeloma cells, LINC00515 is markedly upregulated and functions as a competing endogenous RNA that directly inhibits miR‑140‑5p, leading to an increase in ATG14 expression. This consequently enhances autophagy and chemoresistance, highlighting an oncogenic role for LINC00515 in this disease setting."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": ""}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Moreover, in the context of glioma the inclusion of LINC00515 in an immune gene‐related lncRNA risk model indicates that its expression is positively correlated with key immune checkpoint molecules such as PDL1 and TIM‑3. This association implies that LINC00515 might modulate the tumor immune microenvironment and serve as a prognostic biomarker."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Additionally, in oligohydramnios, upregulation of LINC00515 has been observed along with predicted regulatory interactions with genes involved in focal adhesion and cytokine receptor pathways. This finding points to a potential role for LINC00515 in modulating cellular processes relevant to fetal membrane function and pregnancy outcomes."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "\n "}]}, {"type": "t", "text": "\n \n "}, {"type": "p", "children": [{"type": "t", "text": "\n Collectively, these studies underscore the multifaceted functions of LINC00515, ranging from the regulation of autophagy‐mediated chemoresistance to the modulation of immune landscapes and cell adhesion pathways. Its differential expression in various pathological contexts positions LINC00515 as a promising candidate biomarker and potential therapeutic target across multiple disease models.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Zhi-Guo Zheng, Hong Xu, Sha-Sha Suo, et al. "}, {"type": "b", "children": [{"type": "t", "text": "The Essential Role of H19 Contributing to Cisplatin Resistance by Regulating Glutathione Metabolism in High-Grade Serous Ovarian Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Sci Rep (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1038/srep26093"}], "href": "https://doi.org/10.1038/srep26093"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27193186"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27193186"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Daifeng Lu, Chuandong Yang, Zhitao Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Knockdown of Linc00515 Inhibits Multiple Myeloma Autophagy and Chemoresistance by Upregulating miR-140-5p and Downregulating ATG14."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cell Physiol Biochem (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1159/000492690"}], "href": "https://doi.org/10.1159/000492690"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30121664"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30121664"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Xinzhuang Wang, Ming Gao, Junyi Ye, et al. "}, {"type": "b", "children": [{"type": "t", "text": "An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma Prognosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.612037"}], "href": "https://doi.org/10.3389/fgene.2020.612037"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33391355"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33391355"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Yu-Hua Ou, Yu-Kun Liu, Li-Qiong Zhu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA and transcriptomic analysis of fetal membrane reveal potential targets involved in oligohydramnios."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "BMC Med Genomics (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12920-020-00792-z"}], "href": "https://doi.org/10.1186/s12920-020-00792-z"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32948205"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32948205"}]}]}]}
Synonyms PRED21, C21ORF71
NCBI Gene ID 282566
API
Download Associations
Predicted Functions View LINC00515's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00515's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00515's ARCHS4 Predicted Functions.

Functional Associations

LINC00515 has 1,291 functional associations with biological entities spanning 5 categories (molecular profile, organism, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 20 datasets.

Click the + buttons to view associations for LINC00515 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00515 gene relative to other tissues from the Allen Brain Atlas Adult Human Brain Tissue Gene Expression Profiles dataset.
Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles tissues with high or low expression of LINC00515 gene relative to other tissues from the Allen Brain Atlas Prenatal Human Brain Tissue Gene Expression Profiles dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00515 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00515 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00515 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00515 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00515 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00515 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00515 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00515 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Kinase Perturbations kinase perturbations changing expression of LINC00515 gene from the GEO Signatures of Differentially Expressed Genes for Kinase Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00515 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00515 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00515 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GTEx Tissue-Specific Aging Signatures tissue samples with high or low expression of LINC00515 gene relative to other tissue samples from the GTEx Tissue-Specific Aging Signatures dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00515 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00515 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00515 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00515 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00515 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.