LINC00520 Gene

Name long intergenic non-protein coding RNA 520
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00520, a long intergenic non‐protein coding RNA located on chromosome 14q22.3, has emerged as a critical regulator in a range of pathological conditions. In multiple cancers—including breast, melanoma, lung (both non‐small cell and adenocarcinoma), nasopharyngeal, hepatocellular, glioma, colorectal, and head and neck squamous cell carcinoma—LINC00520 is frequently overexpressed and is strongly associated with advanced tumor stage, poor prognosis, and enhanced cell proliferation, migration, invasion, and metastasis."}, {"type": "fg", "children": [{"type": "fg_fs", "start_ref": "1", "end_ref": "8"}]}, {"type": "t", "text": " Mechanistic studies have revealed that LINC00520 largely exerts its oncogenic influence by acting as a competing endogenous RNA; it sequesters diverse microRNAs—including miR-27b-3p, miR-1252-5p, miR-3611, miR-520f-3p, miR-26b-3p, miR-577, let-7a-5p, and miR-195—to modulate the expression of key downstream targets such as OSMR, EIF5A2, USP39, HSP27, FOXP3, CCNE2, and TFAP4 in context-specific regulatory loops."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}, {"type": "fg_fs", "start_ref": "3", "end_ref": "7"}, {"type": "fg_f", "ref": "10"}, {"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " In addition, genetic variants within LINC00520 have been linked to altered susceptibility and molecular subtypes in breast cancer"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "11"}]}, {"type": "t", "text": ", while its aberrant expression has also been implicated in modulating radiosensitivity in head and neck tumors."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "12"}]}, {"type": "t", "text": " Beyond cancer, LINC00520 contributes to the exacerbation of acute kidney injury through activation of the PI3K/AKT pathway and has even been proposed as a potential non-invasive biomarker in renal cell carcinoma."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}, {"type": "fg_f", "ref": "13"}]}, {"type": "t", "text": " Collectively, these findings establish LINC00520 as a multifaceted regulator of gene expression via ceRNA mechanisms and underscore its promise as both a prognostic biomarker and a therapeutic target across diverse human diseases."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "14"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Xue-Ling Mei, Shan Zhong "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00520 prevents the progression of cutaneous squamous cell carcinoma through the inactivation of the PI3K/Akt signaling pathway by downregulating EGFR."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Chin Med J (Engl) (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1097/CM9.0000000000000070"}], "href": "https://doi.org/10.1097/CM9.0000000000000070"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30707166"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30707166"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Whitney S Henry, David G Hendrickson, Francisco Beca, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00520 is induced by Src, STAT3, and PI3K and plays a functional role in breast cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Oncotarget (2016)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.18632/oncotarget.11962"}], "href": "https://doi.org/10.18632/oncotarget.11962"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "27626181"}], "href": "https://pubmed.ncbi.nlm.nih.gov/27626181"}]}, {"type": "r", "ref": 3, "children": [{"type": "t", "text": "Wenkang Luan, Yuting Ding, Haitao Yuan, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00520 promotes the proliferation and metastasis of malignant melanoma by inducing the miR-125b-5p/EIF5A2 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Exp Clin Cancer Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13046-020-01599-7"}], "href": "https://doi.org/10.1186/s13046-020-01599-7"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32466797"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32466797"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Tao Xie, Guoliang Pi, Bin Yang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA 520 is a negative prognostic biomarker and exhibits pro-oncogenic function in nasopharyngeal carcinoma carcinogenesis through regulation of miR-26b-3p/USP39 axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Gene (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.gene.2019.02.093"}], "href": "https://doi.org/10.1016/j.gene.2019.02.093"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30898716"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30898716"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Yipeng Wang, Chunqing Yang, Xiaobai Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Transcription factor AP-4 (TFAP4)-upstream ORF coding 66 aa inhibits the malignant behaviors of glioma cells by suppressing the TFAP4/long noncoding RNA 00520/microRNA-520f-3p feedback loop."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Sci (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1111/cas.14308"}], "href": "https://doi.org/10.1111/cas.14308"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31943575"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31943575"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Ji-Fang Wang, Zhuo-Na Xi, Hong-Jian Su, et al. "}, {"type": "b", "children": [{"type": "t", "text": "SP1-induced overexpression of LINC00520 facilitates non-small cell lung cancer progression through miR-577/CCNE2 pathway and predicts poor prognosis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Cell (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13577-021-00518-y"}], "href": "https://doi.org/10.1007/s13577-021-00518-y"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33728585"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33728585"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Xinyue Chen, Huimin Chen, Miaowen Liu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00520 accelerates lung adenocarcinoma progression via miR-1252-5p/FOXR2 pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Cell (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13577-020-00478-9"}], "href": "https://doi.org/10.1007/s13577-020-00478-9"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33464477"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33464477"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Xi-Han Jin, Yong-Gang Hong, Peng Li, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long noncoding RNA LINC00520 accelerates the progression of colorectal cancer by serving as a competing endogenous RNA of microRNA-577 to increase HSP27 expression."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Hum Cell (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1007/s13577-020-00336-8"}], "href": "https://doi.org/10.1007/s13577-020-00336-8"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32146708"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32146708"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Xinghan Tian, Yongqiang Ji, Yafeng Liang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00520 targeting miR-27b-3p regulates OSMR expression level to promote acute kidney injury development through the PI3K/AKT signaling pathway."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cell Physiol (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/jcp.28118"}], "href": "https://doi.org/10.1002/jcp.28118"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30684280"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30684280"}]}, {"type": "r", "ref": 10, "children": [{"type": "t", "text": "Yi Ding, Min Li, Tuersong Tayier, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Bioinformatics analysis of lncRNA‑associated ceRNA network in melanoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "J Cancer (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.7150/jca.51851"}], "href": "https://doi.org/10.7150/jca.51851"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33854593"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33854593"}]}, {"type": "r", "ref": 11, "children": [{"type": "t", "text": "Qiaoyun Guo, Linping Xu, Rui Peng, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Silencing of long non-coding RNA LINC00520 promotes radiosensitivity of head and neck squamous cell carcinoma cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Free Radic Res (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1080/10715762.2020.1752373"}], "href": "https://doi.org/10.1080/10715762.2020.1752373"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32462956"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32462956"}]}, {"type": "r", "ref": 13, "children": [{"type": "t", "text": "Binghai Chen, Chengyue Wang, Jin Zhang, et al. "}, {"type": "b", "children": [{"type": "t", "text": "New insights into long noncoding RNAs and pseudogenes in prognosis of renal cell carcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Cell Int (2018)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s12935-018-0652-6"}], "href": "https://doi.org/10.1186/s12935-018-0652-6"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "30337839"}], "href": "https://pubmed.ncbi.nlm.nih.gov/30337839"}]}, {"type": "r", "ref": 14, "children": [{"type": "t", "text": "Qiudan Zhang, Jinze Shen, Yuchen Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LINC00520: A Potential Diagnostic and Prognostic Biomarker in Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Immunol (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fimmu.2022.845418"}], "href": "https://doi.org/10.3389/fimmu.2022.845418"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35309319"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35309319"}]}]}]}
Synonyms C14ORF34
NCBI Gene ID 645687
API
Download Associations
Predicted Functions View LINC00520's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00520's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00520's ARCHS4 Predicted Functions.

Functional Associations

LINC00520 has 575 functional associations with biological entities spanning 7 categories (molecular profile, organism, disease, phenotype or trait, chemical, functional term, phrase or reference, cell line, cell type or tissue, gene, protein or microRNA) extracted from 22 datasets.

Click the + buttons to view associations for LINC00520 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00520 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00520 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
ChEA Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00520 gene from the CHEA Transcription Factor Binding Site Profiles dataset.
ChEA Transcription Factor Targets transcription factors binding the promoter of LINC00520 gene in low- or high-throughput transcription factor functional studies from the CHEA Transcription Factor Targets dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00520 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00520 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00520 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00520 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GAD High Level Gene-Disease Associations diseases associated with LINC00520 gene in GWAS and other genetic association datasets from the GAD High Level Gene-Disease Associations dataset.
GEO Signatures of Differentially Expressed Genes for Diseases disease perturbations changing expression of LINC00520 gene from the GEO Signatures of Differentially Expressed Genes for Diseases dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00520 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00520 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00520 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00520 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00520 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00520 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
JASPAR Predicted Transcription Factor Targets transcription factors regulating expression of LINC00520 gene predicted using known transcription factor binding site motifs from the JASPAR Predicted Transcription Factor Targets dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00520 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
LOCATE Predicted Protein Localization Annotations cellular components predicted to contain LINC00520 protein from the LOCATE Predicted Protein Localization Annotations dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00520 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00520 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.
TCGA Signatures of Differentially Expressed Genes for Tumors tissue samples with high or low expression of LINC00520 gene relative to other tissue samples from the TCGA Signatures of Differentially Expressed Genes for Tumors dataset.