LINC00525 Gene

Name long intergenic non-protein coding RNA 525
Summary
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n LINC00525 is a long noncoding RNA that plays diverse roles in human disease, most notably in cancer and inflammatory conditions. In lung adenocarcinoma, LINC00525 is frequently upregulated and associated with poor patient survival; it promotes tumor progression by repressing the tumor‐suppressor p21 through dual mechanisms—epigenetically, by guiding EZH2 to the p21 promoter to increase H3K27me3 levels, and post‐transcriptionally, by enhancing p21 mRNA decay via competitive binding to RBMS2."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": " In colorectal cancer, this lncRNA is hypoxia‐responsive and essential for hypoxia‐enhanced glycolysis by sponging miR-338-3p to upregulate UBE2Q1, which stabilizes β-catenin and activates HIF-1α signaling."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "2"}]}, {"type": "t", "text": " In spinal chordoma, LINC00525 exerts its oncogenic function by targeting miR-31-5p and miR-125a-5p, thereby promoting cell proliferation, migration, invasion, and epithelial-to-mesenchymal transition."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "3"}]}, {"type": "t", "text": " Analyses in non-small cell lung cancer have further implicated LINC00525 within a competing endogenous RNA (ceRNA) network and have shown its expression to correlate with clinical parameters such as smoking history"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "4"}]}, {"type": "t", "text": "and."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "5"}]}, {"type": "t", "text": " Beyond oncology, LINC00525 is also upregulated in periodontitis lesions, where its expression positively correlates with plasma cell infiltration, suggesting a role in modulating immune responses."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "6"}]}, {"type": "t", "text": " In colorectal cancer, additional studies have shown that LINC00525 enhances cancer stem cell properties and influences chemoresistance through the miR-507/ELK3 axis"}, {"type": "fg", "children": [{"type": "fg_f", "ref": "7"}]}, {"type": "t", "text": ", while in multiple myeloma it has been incorporated into a prognostic two-lncRNA signature, highlighting its potential role in disease progression."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "8"}]}, {"type": "t", "text": " Finally, in glioma, LINC00525 is markedly overexpressed, and its knockdown significantly reduces proliferation, migration, invasion, and epithelial-to-mesenchymal transition via a miR-338-3p-mediated mechanism."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "9"}]}, {"type": "t", "text": " Collectively, these findings demonstrate that LINC00525 functions as an oncogenic regulator by serving as a ceRNA to modulate key downstream signaling pathways and gene expression, underscoring its promise as a prognostic biomarker and therapeutic target.\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Panqi Fang, Hao Chen, Zhifei Ma, et al. "}, {"type": "b", "children": [{"type": "t", "text": "LncRNA LINC00525 suppresses p21 expression via mRNA decay and triplex-mediated changes in chromatin structure in lung adenocarcinoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cancer Commun (Lond) (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1002/cac2.12181"}], "href": "https://doi.org/10.1002/cac2.12181"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34105888"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34105888"}]}, {"type": "r", "ref": 2, "children": [{"type": "t", "text": "Fanqi Meng, Xiaofan Luo, Chenyao Li, et al. 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"}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00525 interacts with miR-31-5p and miR-125a-5p to act as an oncogenic molecule in spinal chordoma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Biochem Biophys Res Commun (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.bbrc.2020.12.042"}], "href": "https://doi.org/10.1016/j.bbrc.2020.12.042"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33370717"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33370717"}]}, {"type": "r", "ref": 4, "children": [{"type": "t", "text": "Danyang Shen, Youyun Zhang, Qiming Zheng, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A Competing Endogenous RNA Network and an 8-lncRNA Prognostic Signature Identify "}, {"type": "a", "children": [{"type": "t", "text": "i"}], "href": "i"}, {"type": "t", "text": "MYO16-AS1"}, {"type": "a", "children": [{"type": "t", "text": "/i"}], "href": "/i"}, {"type": "t", "text": " as an Oncogenic lncRNA in Bladder Cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "DNA Cell Biol (2021)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1089/dna.2020.6014"}], "href": "https://doi.org/10.1089/dna.2020.6014"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33270518"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33270518"}]}, {"type": "r", "ref": 5, "children": [{"type": "t", "text": "Wen Li, Shan-Shan Feng, Hao Wu, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Comprehensive Analysis of CDK1-Associated ceRNA Network Revealing the Key Pathways LINC00460/LINC00525-Hsa-Mir-338-FAM111/ZWINT as Prognostic Biomarkers in Lung Adenocarcinoma Combined with Experiments."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Cells (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3390/cells11071220"}], "href": "https://doi.org/10.3390/cells11071220"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "35406786"}], "href": "https://pubmed.ncbi.nlm.nih.gov/35406786"}]}, {"type": "r", "ref": 6, "children": [{"type": "t", "text": "Donglei Wu, Peng Zhou, Fengdi Cao, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Expression Profiling and Cell Type Classification Analysis in Periodontitis Reveal Dysregulation of Multiple lncRNAs in Plasma Cells."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.00382"}], "href": "https://doi.org/10.3389/fgene.2020.00382"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32411181"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32411181"}]}, {"type": "r", "ref": 7, "children": [{"type": "t", "text": "Shunsheng Wang, Jing Li, Xiaopeng Yang "}, {"type": "b", "children": [{"type": "t", "text": "Long Non-Coding RNA LINC00525 Promotes the Stemness and Chemoresistance of Colorectal Cancer by Targeting miR-507/ELK3 Axis."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Int J Stem Cells (2019)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.15283/ijsc19041"}], "href": "https://doi.org/10.15283/ijsc19041"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "31242722"}], "href": "https://pubmed.ncbi.nlm.nih.gov/31242722"}]}, {"type": "r", "ref": 8, "children": [{"type": "t", "text": "Sijie Zhou, Jiuyuan Fang, Yan Sun, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Integrated Analysis of a Risk Score System Predicting Prognosis and a ceRNA Network for Differentially Expressed lncRNAs in Multiple Myeloma."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Front Genet (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.3389/fgene.2020.00934"}], "href": "https://doi.org/10.3389/fgene.2020.00934"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "33193574"}], "href": "https://pubmed.ncbi.nlm.nih.gov/33193574"}]}, {"type": "r", "ref": 9, "children": [{"type": "t", "text": "Yilv Wan, Feng Liang, Minjun Wei, et al. "}, {"type": "b", "children": [{"type": "t", "text": "Long non-coding RNA LINC00525 regulates the proliferation and epithelial to mesenchymal transition of human glioma cells by sponging miR-338-3p."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "AMB Express (2020)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1186/s13568-020-01094-4"}], "href": "https://doi.org/10.1186/s13568-020-01094-4"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "32857271"}], "href": "https://pubmed.ncbi.nlm.nih.gov/32857271"}]}]}]}
NCBI Gene ID 84847
API
Download Associations
Predicted Functions View LINC00525's ARCHS4 Predicted Functions.
Co-expressed Genes View LINC00525's ARCHS4 Predicted Functions.
Expression in Tissues and Cell Lines View LINC00525's ARCHS4 Predicted Functions.

Functional Associations

LINC00525 has 653 functional associations with biological entities spanning 6 categories (molecular profile, organism, chemical, disease, phenotype or trait, cell line, cell type or tissue, gene, protein or microRNA) extracted from 18 datasets.

Click the + buttons to view associations for LINC00525 from the datasets below.

If available, associations are ranked by standardized value

Dataset Summary
Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray tissue samples with high or low expression of LINC00525 gene relative to other tissue samples from the Allen Brain Atlas Developing Human Brain Tissue Gene Expression Profiles by Microarray dataset.
CCLE Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00525 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset.
CCLE Cell Line Gene Expression Profiles cell lines with high or low expression of LINC00525 gene relative to other cell lines from the CCLE Cell Line Gene Expression Profiles dataset.
COSMIC Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00525 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset.
ENCODE Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00525 gene from the ENCODE Histone Modification Site Profiles dataset.
ENCODE Transcription Factor Binding Site Profiles transcription factor binding site profiles with transcription factor binding evidence at the promoter of LINC00525 gene from the ENCODE Transcription Factor Binding Site Profiles dataset.
ENCODE Transcription Factor Targets transcription factors binding the promoter of LINC00525 gene in ChIP-seq datasets from the ENCODE Transcription Factor Targets dataset.
GEO Signatures of Differentially Expressed Genes for Gene Perturbations gene perturbations changing expression of LINC00525 gene from the GEO Signatures of Differentially Expressed Genes for Gene Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Small Molecules small molecule perturbations changing expression of LINC00525 gene from the GEO Signatures of Differentially Expressed Genes for Small Molecules dataset.
GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations transcription factor perturbations changing expression of LINC00525 gene from the GEO Signatures of Differentially Expressed Genes for Transcription Factor Perturbations dataset.
GEO Signatures of Differentially Expressed Genes for Viral Infections virus perturbations changing expression of LINC00525 gene from the GEO Signatures of Differentially Expressed Genes for Viral Infections dataset.
GTEx Tissue Gene Expression Profiles tissues with high or low expression of LINC00525 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset.
GTEx Tissue Sample Gene Expression Profiles tissue samples with high or low expression of LINC00525 gene relative to other tissue samples from the GTEx Tissue Sample Gene Expression Profiles dataset.
GWASdb SNP-Disease Associations diseases associated with LINC00525 gene in GWAS and other genetic association datasets from the GWASdb SNP-Disease Associations dataset.
GWASdb SNP-Phenotype Associations phenotypes associated with LINC00525 gene in GWAS datasets from the GWASdb SNP-Phenotype Associations dataset.
Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles cell lines with high or low copy number of LINC00525 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset.
MotifMap Predicted Transcription Factor Targets transcription factors regulating expression of LINC00525 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset.
Roadmap Epigenomics Histone Modification Site Profiles histone modification site profiles with high histone modification abundance at LINC00525 gene from the Roadmap Epigenomics Histone Modification Site Profiles dataset.