| Name | long intergenic non-protein coding RNA 534 |
| Summary |
{"type": "root", "children": [{"type": "p", "children": [{"type": "t", "text": "\n Recent studies have demonstrated that tumor‐educated platelets are a promising source of diagnostic biomarkers in colorectal cancer (CRC). In this context, a panel of platelet‐associated long non‐coding RNAs was evaluated, in which LINC00534, along with LNCAROD, SNHG20, and TSPOAP‐AS1, was found to be significantly upregulated in both platelets and serum samples of CRC patients. The upregulation of LINC00534 contributes to a diagnostic model that achieved an area under the ROC curve of 0.78, underscoring its potential utility in non‐invasive CRC diagnostics. These findings also support the concept of cross-talk between CRC-affected platelets and serum RNA profiles, suggesting that LINC00534 may serve as a valuable biomarker within a broader lncRNA panel for effective disease detection."}, {"type": "fg", "children": [{"type": "fg_f", "ref": "1"}]}, {"type": "t", "text": "\n "}]}, {"type": "rg", "children": [{"type": "r", "ref": 1, "children": [{"type": "t", "text": "Bingqi Ye, Fengying Li, Mengsha Chen, et al. "}, {"type": "b", "children": [{"type": "t", "text": "A panel of platelet-associated circulating long non-coding RNAs as potential biomarkers for colorectal cancer."}]}, {"type": "t", "text": " "}, {"type": "i", "children": [{"type": "t", "text": "Genomics (2022)"}]}, {"type": "t", "text": " DOI: "}, {"type": "a", "children": [{"type": "t", "text": "10.1016/j.ygeno.2021.11.026"}], "href": "https://doi.org/10.1016/j.ygeno.2021.11.026"}, {"type": "t", "text": " PMID: "}, {"type": "a", "children": [{"type": "t", "text": "34843904"}], "href": "https://pubmed.ncbi.nlm.nih.gov/34843904"}]}]}]}
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| NCBI Gene ID | 100874052 |
| API | |
| Download Associations | |
| Predicted Functions |
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| Co-expressed Genes |
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| Expression in Tissues and Cell Lines |
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LINC00534 has 174 functional associations with biological entities spanning 2 categories (cell line, cell type or tissue, gene, protein or microRNA) extracted from 5 datasets.
Click the + buttons to view associations for LINC00534 from the datasets below.
If available, associations are ranked by standardized value
| Dataset | Summary | |
|---|---|---|
| CCLE Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00534 gene relative to other cell lines from the CCLE Cell Line Gene CNV Profiles dataset. | |
| COSMIC Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00534 gene relative to other cell lines from the COSMIC Cell Line Gene CNV Profiles dataset. | |
| GTEx Tissue Gene Expression Profiles | tissues with high or low expression of LINC00534 gene relative to other tissues from the GTEx Tissue Gene Expression Profiles dataset. | |
| Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles | cell lines with high or low copy number of LINC00534 gene relative to other cell lines from the Klijn et al., Nat. Biotechnol., 2015 Cell Line Gene CNV Profiles dataset. | |
| MotifMap Predicted Transcription Factor Targets | transcription factors regulating expression of LINC00534 gene predicted using known transcription factor binding site motifs from the MotifMap Predicted Transcription Factor Targets dataset. | |